Schema for flyBaseBlastTab
  Database: dm2    Primary Table: flyBaseBlastTab    Row Count: 1,171,062   Data last updated: 2007-04-06
Format description: Blast alignments of Mouse genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query CG30188-RAvarchar(255) Name of sequence in this assembly (query)
target CG30188-RAvarchar(255) Name of sequence in other assembly (target)
identity 100float Percent identity
aliLength 1073int(10) unsigned Length of alignment
mismatch 0int(10) unsigned Number of mismatches
gapOpen 0int(10) unsigned Number of gap openings
qStart 0int(10) unsigned Start in query (0 based)
qEnd 1073int(10) unsigned End in query (non-inclusive)
tStart 0int(10) unsigned Start in target (0 based)
tEnd 1073int(10) unsigned End in target (non-inclusive)
eValue 0double Expectation value
bitScore 1769double Bit score

Connected Tables and Joining Fields
        dm2.arbExpDistance.query (via flyBaseBlastTab.query)
      dm2.arbExpDistance.target (via flyBaseBlastTab.query)
      dm2.ceBlastTab.query (via flyBaseBlastTab.query)
      dm2.drBlastTab.query (via flyBaseBlastTab.query)
      dm2.flyBase2004Xref.name (via flyBaseBlastTab.query)
      dm2.flyBaseCanonical.transcript (via flyBaseBlastTab.query)
      dm2.flyBaseGene.name (via flyBaseBlastTab.query)
      dm2.flyBaseIsoforms.transcript (via flyBaseBlastTab.query)
      dm2.flyBaseNoncoding.name (via flyBaseBlastTab.query)
      dm2.flyBasePep.name (via flyBaseBlastTab.query)
      dm2.flyBaseToCG.name (via flyBaseBlastTab.query)
      dm2.flyBaseToDescription.name (via flyBaseBlastTab.query)
      dm2.flyBaseToPfam.name (via flyBaseBlastTab.query)
      dm2.flyBaseToRefSeq.name (via flyBaseBlastTab.query)
      dm2.flyBaseToUniProt.name (via flyBaseBlastTab.query)
      dm2.flyP2P.query (via flyBaseBlastTab.query)
      dm2.flyP2P.target (via flyBaseBlastTab.query)
      dm2.hgBlastTab.query (via flyBaseBlastTab.query)
      dm2.mmBlastTab.query (via flyBaseBlastTab.query)
      dm2.rnBlastTab.query (via flyBaseBlastTab.query)
      dm2.scBlastTab.query (via flyBaseBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
CG30188-RACG30188-RA100107300010730107301769
CG30188-RACG33041-RA35.57447260716458985225e-71266
CG30188-RACG33041-RA31.161389326127495326690.000000000165.9
CG30188-RACG14372-RB35.494482568164581195402e-68258
CG30188-RACG14372-RB25.151719846247665627320.00000000959.7
CG30188-RACG33515-RA35.754282476304541165203e-66250
CG30188-RACG33515-RA29.1916110146127635336910.00000000000271.6
CG30188-RACG12950-RA35.51428249730454794846e-64243
CG30188-RACG12950-RA27.0722914866248415097316e-1683.6
CG30188-RACG31062-RA30.4344727010164501385574.0000000000000005e-49193

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.