Schema for scBlastTab
  Database: dm2    Primary Table: scBlastTab    Row Count: 2,167   Data last updated: 2007-04-06
Format description: Blast alignments of S. cerevisiae genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query CG10354-RAvarchar(255) values Name of sequence in this assembly (query)
target YOR048Cvarchar(255) values Name of sequence in other assembly (target)
identity 48.75float range Percent identity
aliLength 439int(10) unsigned range Length of alignment
mismatch 198int(10) unsigned range Number of mismatches
gapOpen 8int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 431int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 420int(10) unsigned range End in target (non-inclusive)
eValue 4.0000000000000003e-112double range Expectation value
bitScore 400double range Bit score

Connected Tables and Joining Fields
        dm2.arbExpDistance.query (via scBlastTab.query)
      dm2.arbExpDistance.target (via scBlastTab.query)
      dm2.ceBlastTab.query (via scBlastTab.query)
      dm2.drBlastTab.query (via scBlastTab.query)
      dm2.flyBase2004Xref.name (via scBlastTab.query)
      dm2.flyBaseBlastTab.query (via scBlastTab.query)
      dm2.flyBaseBlastTab.target (via scBlastTab.query)
      dm2.flyBaseCanonical.transcript (via scBlastTab.query)
      dm2.flyBaseGene.name (via scBlastTab.query)
      dm2.flyBaseIsoforms.transcript (via scBlastTab.query)
      dm2.flyBaseNoncoding.name (via scBlastTab.query)
      dm2.flyBasePep.name (via scBlastTab.query)
      dm2.flyBaseToCG.name (via scBlastTab.query)
      dm2.flyBaseToDescription.name (via scBlastTab.query)
      dm2.flyBaseToPfam.name (via scBlastTab.query)
      dm2.flyBaseToRefSeq.name (via scBlastTab.query)
      dm2.flyBaseToUniProt.name (via scBlastTab.query)
      dm2.flyP2P.query (via scBlastTab.query)
      dm2.flyP2P.target (via scBlastTab.query)
      dm2.hgBlastTab.query (via scBlastTab.query)
      dm2.mmBlastTab.query (via scBlastTab.query)
      dm2.rnBlastTab.query (via scBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
CG10354-RAYOR048C48.754391988043104204.0000000000000003e-112400
CG9773-RAYKR030W35200115551237412402e-27117
CG8344-RAYOR207C58.3711174481027113637114501232
CG14749-RAYDL207W23.18289192113756562555220.00000150.1
CG14750-RAYJR102C25.271861114616441904e-1885.5
CG31126-RAYAL044W-A39.22512914293521010.0000640.4
CG33104-RAYGL002W31.052191454021602166e-27115
CG1429-RFYPL089C52.56783610770781e-1682.4
CG1430-RAYBR247C35.934622231218419284784e-71263
CG10802-RAYNL040W27.99443262134406144418e-35142

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.