Schema for all_est
  Database: galGal6    Primary Table: all_est    Row Count: 584,670   Data last updated: 2018-10-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 856smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 511int(10) unsigned Number of bases that match that aren't repeats
misMatches 1int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 5int(10) unsigned Number of inserts in query
qBaseInsert 8int(10) unsigned Number of bases inserted in query
tNumInsert 20int(10) unsigned Number of inserts in target
tBaseInsert 2566int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AA495708varchar(255) Query sequence name
qSize 529int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 520int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 197608386int(10) unsigned Target sequence size
tStart 35623123int(10) unsigned Alignment start position in target
tEnd 35626201int(10) unsigned Alignment end position in target
blockCount 21int(10) unsigned Number of blocks in alignment
blockSizes 110,77,113,63,17,12,14,14,7...longblob Size of each block
qStarts 0,110,187,300,363,380,392,4...longblob Start of each block in query.
tStarts 35623123,35623677,35624788,...longblob Start of each block in target.

Connected Tables and Joining Fields
        galGal6.all_mrna.qName (via all_est.qName)
      galGal6.estOrientInfo.name (via all_est.qName)
      galGal6.intronEst.qName (via all_est.qName)
      galGal6.refGene.name (via all_est.qName)
      galGal6.refSeqAli.qName (via all_est.qName)
      galGal6.xenoMrna.qName (via all_est.qName)
      galGal6.xenoRefGene.name (via all_est.qName)
      galGal6.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
85651110058202566+AA4957085290520chr1197608386356231233562620121110,77,113,63,17,12,14,14,7,5,7,6,7,9,5,7,5,9,11,5,9,0,110,187,300,363,380,392,409,423,430,436,443,451,458,467,473,480,486,495,506,511,35623123,35623677,35624788,35625778,35625842,35625860,35625873,35625892,35625908,35625916,35625923,35625931,35625942,35625950,35 ...
1180464000139271-AA4957015100467chr11976083867801971078020445109,5,17,15,15,71,56,80,85,111,43,52,57,77,92,107,178,234,314,399,78019710,78019736,78019742,78019764,78019780,78019796,78019868,78020002,78020164,78020334,
1535546101003943+AA4957195710548chr1197608386124544468124545959444,114,217,173,0,44,158,375,124544468,124545176,124545568,124545786,
72848150483371015-AA4957155610523chr11202000421874740618748911127,7,28,12,4,9,24,12,62,69,124,132,38,46,56,84,97,104,115,144,157,219,305,429,18747406,18747413,18747421,18747522,18747534,18747539,18747548,18747575,18747587,18747761,18747846,18748779,
591569101234486+AA4956965750574chr1910323212846726847783612,41,133,232,146,7,0,12,55,188,420,567,846726,846918,846962,847287,847630,847776,
699422301297927+AA49569955047482chr21496820491501625915017612885,41,246,4,18,14,13,5,47,132,173,419,423,448,464,477,15016259,15016345,15017294,15017541,15017546,15017575,15017593,15017607,
66843530911652051+AA4957044630463chr20138972871089609510898593668,36,133,151,24,35,0,68,120,253,404,428,10896095,10897336,10897383,10898090,10898533,10898558,
62650500333161776+AA4957005430511chr236149580537604953783331753,22,53,148,90,49,4,10,6,14,11,9,12,3,5,11,8,0,53,76,129,277,368,417,421,431,437,451,462,471,483,486,492,503,5376049,5376103,5376127,5376748,5377332,5377424,5377474,5378234,5378245,5378252,5378267,5378279,5378289,5378302,5378306,5378313, ...
6095330011157239+AA49571457136571chr26605571032454383253211772,84,69,57,141,56,55,36,108,192,261,318,459,516,3245438,3248024,3249491,3250468,3251147,3253100,3253156,
63047500745071678+AA4957186350532chr27808043259894015991561930,126,162,63,36,16,6,17,26,0,30,156,318,387,423,440,448,506,5989401,5989931,5990436,5991097,5991163,5991200,5991216,5991223,5991535,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.