Schema for drBlastTab
  Database: hg16    Primary Table: drBlastTab    Row Count: 32,971   Data last updated: 2004-03-30
Format description: Blast alignments of Zebrafish genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB000114varchar(255) values Name of sequence in this assembly (query)
target ENSDARP00000025596varchar(255) values Name of sequence in other assembly (target)
identity 50.28float range Percent identity
aliLength 358int(10) unsigned range Length of alignment
mismatch 176int(10) unsigned range Number of mismatches
gapOpen 2int(10) unsigned range Number of gap openings
qStart 9int(10) unsigned range Start in query (0 based)
qEnd 366int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 357int(10) unsigned range End in target (non-inclusive)
eValue 7.3e-93double range Expectation value
bitScore 337.4double range Bit score

Connected Tables and Joining Fields
        hg16.bioCycPathway.kgID (via drBlastTab.query)
      hg16.dmBlastTab.query (via drBlastTab.query)
      hg16.dupSpMrna.mrnaID (via drBlastTab.query)
      hg16.foldUtr3.name (via drBlastTab.query)
      hg16.foldUtr5.name (via drBlastTab.query)
      hg16.gnfAtlas2Distance.query (via drBlastTab.query)
      hg16.gnfAtlas2Distance.target (via drBlastTab.query)
      hg16.gnfU95Distance.query (via drBlastTab.query)
      hg16.gnfU95Distance.target (via drBlastTab.query)
      hg16.hg17Kg.name (via drBlastTab.query)
      hg16.keggPathway.kgID (via drBlastTab.query)
      hg16.kgAlias.kgID (via drBlastTab.query)
      hg16.kgProtAlias.kgID (via drBlastTab.query)
      hg16.kgXref.kgID (via drBlastTab.query)
      hg16.knownBlastTab.query (via drBlastTab.query)
      hg16.knownBlastTab.target (via drBlastTab.query)
      hg16.knownCanonical.transcript (via drBlastTab.query)
      hg16.knownGene.name (via drBlastTab.query)
      hg16.knownGeneLink.name (via drBlastTab.query)
      hg16.knownGeneMrna.name (via drBlastTab.query)
      hg16.knownGenePep.name (via drBlastTab.query)
      hg16.knownIsoforms.transcript (via drBlastTab.query)
      hg16.knownToEnsembl.name (via drBlastTab.query)
      hg16.knownToGnfAtlas2.name (via drBlastTab.query)
      hg16.knownToHInv.name (via drBlastTab.query)
      hg16.knownToLocusLink.name (via drBlastTab.query)
      hg16.knownToPfam.name (via drBlastTab.query)
      hg16.knownToRefSeq.name (via drBlastTab.query)
      hg16.knownToSuper.gene (via drBlastTab.query)
      hg16.knownToU133.name (via drBlastTab.query)
      hg16.knownToU95.name (via drBlastTab.query)
      hg16.scBlastTab.query (via drBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via drBlastTab.query)
      knownGeneV39.ceBlastTab.query (via drBlastTab.query)
      knownGeneV39.dmBlastTab.query (via drBlastTab.query)
      knownGeneV39.drBlastTab.query (via drBlastTab.query)
      knownGeneV39.foldUtr3.name (via drBlastTab.query)
      knownGeneV39.foldUtr5.name (via drBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via drBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via drBlastTab.query)
      knownGeneV39.kgAlias.kgID (via drBlastTab.query)
      knownGeneV39.kgColor.kgID (via drBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via drBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via drBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via drBlastTab.query)
      knownGeneV39.kgXref.kgID (via drBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via drBlastTab.query)
      knownGeneV39.knownBlastTab.query (via drBlastTab.query)
      knownGeneV39.knownBlastTab.target (via drBlastTab.query)
      knownGeneV39.knownCanonical.protein (via drBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via drBlastTab.query)
      knownGeneV39.knownCds.name (via drBlastTab.query)
      knownGeneV39.knownGene.name (via drBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via drBlastTab.query)
      knownGeneV39.knownGenePep.name (via drBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via drBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via drBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via drBlastTab.query)
      knownGeneV39.knownToHprd.name (via drBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via drBlastTab.query)
      knownGeneV39.knownToMrna.name (via drBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via drBlastTab.query)
      knownGeneV39.knownToMupit.name (via drBlastTab.query)
      knownGeneV39.knownToPfam.name (via drBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via drBlastTab.query)
      knownGeneV39.knownToSuper.gene (via drBlastTab.query)
      knownGeneV39.knownToTag.name (via drBlastTab.query)
      knownGeneV39.knownToU133.name (via drBlastTab.query)
      knownGeneV39.knownToU95.name (via drBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via drBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via drBlastTab.query)
      knownGeneV39.mmBlastTab.query (via drBlastTab.query)
      knownGeneV39.rnBlastTab.query (via drBlastTab.query)
      knownGeneV39.scBlastTab.query (via drBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via drBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000114ENSDARP0000002559650.283581762936603577.3e-93337.4
AB000115ENSDARP0000000603643.48253143014239502536.3e-57218
AB000220ENSDARP0000002685968.98735212422748673401077.4
AB000277ENSDARP0000001771638.52984505296397709541e-139494.6
AB000449ENSDARP0000000349852.8321293313034202051.1e-58223.8
AB000459ENSDARP0000002603344.5543121012801122004141.6e-51201.8
AB000460ENSDARP0000002603340.6847221013801126104141.8e-45181.8
AB000461ENSDARP0000000800339.89178789294462341930.0000000000003273.94
AB000462ENSDARP0000001914726.269962426122261170.00001348.14
AB000468ENSDARP0000000260936.148342510618421980.000003647.75

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.