Schema for knownGenePep
  Database: hg16    Primary Table: knownGenePep    Row Count: 42,026   Data last updated: 2004-03-27
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000099varchar(255) values Name of gene
seq MSLIILTRDDEPRIFTPDSDAASPALH...longblob   mRNA sequence

Connected Tables and Joining Fields
        hg16.bioCycPathway.kgID (via knownGenePep.name)
      hg16.dmBlastTab.query (via knownGenePep.name)
      hg16.drBlastTab.query (via knownGenePep.name)
      hg16.dupSpMrna.mrnaID (via knownGenePep.name)
      hg16.foldUtr3.name (via knownGenePep.name)
      hg16.foldUtr5.name (via knownGenePep.name)
      hg16.gnfAtlas2Distance.query (via knownGenePep.name)
      hg16.gnfAtlas2Distance.target (via knownGenePep.name)
      hg16.gnfU95Distance.query (via knownGenePep.name)
      hg16.gnfU95Distance.target (via knownGenePep.name)
      hg16.hg17Kg.name (via knownGenePep.name)
      hg16.keggPathway.kgID (via knownGenePep.name)
      hg16.kgAlias.kgID (via knownGenePep.name)
      hg16.kgProtAlias.kgID (via knownGenePep.name)
      hg16.kgXref.kgID (via knownGenePep.name)
      hg16.knownBlastTab.query (via knownGenePep.name)
      hg16.knownBlastTab.target (via knownGenePep.name)
      hg16.knownCanonical.transcript (via knownGenePep.name)
      hg16.knownGene.name (via knownGenePep.name)
      hg16.knownGeneLink.name (via knownGenePep.name)
      hg16.knownGeneMrna.name (via knownGenePep.name)
      hg16.knownIsoforms.transcript (via knownGenePep.name)
      hg16.knownToEnsembl.name (via knownGenePep.name)
      hg16.knownToGnfAtlas2.name (via knownGenePep.name)
      hg16.knownToHInv.name (via knownGenePep.name)
      hg16.knownToLocusLink.name (via knownGenePep.name)
      hg16.knownToPfam.name (via knownGenePep.name)
      hg16.knownToRefSeq.name (via knownGenePep.name)
      hg16.knownToSuper.gene (via knownGenePep.name)
      hg16.knownToU133.name (via knownGenePep.name)
      hg16.knownToU95.name (via knownGenePep.name)
      hg16.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.bioCycPathway.kgID (via knownGenePep.name)
      knownGeneV39.ceBlastTab.query (via knownGenePep.name)
      knownGeneV39.dmBlastTab.query (via knownGenePep.name)
      knownGeneV39.drBlastTab.query (via knownGenePep.name)
      knownGeneV39.foldUtr3.name (via knownGenePep.name)
      knownGeneV39.foldUtr5.name (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGenePep.name)
      knownGeneV39.kgAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgColor.kgID (via knownGenePep.name)
      knownGeneV39.kgProtAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgSpAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgTargetAli.qName (via knownGenePep.name)
      knownGeneV39.kgXref.kgID (via knownGenePep.name)
      knownGeneV39.knownAttrs.kgID (via knownGenePep.name)
      knownGeneV39.knownBlastTab.query (via knownGenePep.name)
      knownGeneV39.knownBlastTab.target (via knownGenePep.name)
      knownGeneV39.knownCanonical.protein (via knownGenePep.name)
      knownGeneV39.knownCanonical.transcript (via knownGenePep.name)
      knownGeneV39.knownCds.name (via knownGenePep.name)
      knownGeneV39.knownGene.name (via knownGenePep.name)
      knownGeneV39.knownGeneMrna.name (via knownGenePep.name)
      knownGeneV39.knownGenePep.name (via knownGenePep.name)
      knownGeneV39.knownIsoforms.transcript (via knownGenePep.name)
      knownGeneV39.knownToEnsembl.name (via knownGenePep.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGenePep.name)
      knownGeneV39.knownToHprd.name (via knownGenePep.name)
      knownGeneV39.knownToLocusLink.name (via knownGenePep.name)
      knownGeneV39.knownToMrna.name (via knownGenePep.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGenePep.name)
      knownGeneV39.knownToMupit.name (via knownGenePep.name)
      knownGeneV39.knownToPfam.name (via knownGenePep.name)
      knownGeneV39.knownToRefSeq.name (via knownGenePep.name)
      knownGeneV39.knownToSuper.gene (via knownGenePep.name)
      knownGeneV39.knownToTag.name (via knownGenePep.name)
      knownGeneV39.knownToU133.name (via knownGenePep.name)
      knownGeneV39.knownToU95.name (via knownGenePep.name)
      knownGeneV39.knownToVisiGene.name (via knownGenePep.name)
      knownGeneV39.knownToWikipedia.name (via knownGenePep.name)
      knownGeneV39.mmBlastTab.query (via knownGenePep.name)
      knownGeneV39.rnBlastTab.query (via knownGenePep.name)
      knownGeneV39.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.ucscScop.ucscId (via knownGenePep.name)

Sample Rows
 
nameseq
AB000099MSLIILTRDDEPRIFTPDSDAASPALHSTSPLPDPASASPLHREEKILPKVCNIVSCLSFSLPASPTDSGLASPTIITREGQQFWAKCLIWKYQLYLHGLHKKSDGRRDKQISASPST
AB000114MGFLSPIYVIFFFFGVKVHCQYETYQWDEDYDQEPDDDYQTGFPFRQNVDYGVPFHQYTLGCVSECFCPTNFPSSMYCDNRKLKTIPNIPMHIQQLYLQFNEIEAVTANSFINATHLKEINLSHNKIK ...
AB000115MVERCSRQGCTITMAYIDYNMIVAFMLGNYINLRESSTEPNDSLWFSLQKKNDTTEIETLLLNTAPKIIDEQLVCRLSKTDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVEGIKDNLDD ...
AB000220MAFRTICVLVGVFICSICVKGSSQPQARVYLTFDELRETKTSEYFSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNINNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTFNRTHLY ...
AB000277MKGLSGSRSHHHGVTCDSACDSLSHHSDRKPYLLSPVEHHPADHPYYTQRNSFQAECVGPFSDPLASSTFPRRHYTSQQELKDECALVPRTLATKANRIPANLLDQFERQLPLSRDGYHTLQYKRTAV ...
AB000449MPRVKAAQAGRQSSAKRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRF ...
AB000459MKVRLLRQLSAAAKVKAPSGLQGPPQAHQFISLLLEEYGALCQAARSISTFLGTLENEHLKKFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIRLGTTTHDTCSEDTYSTLLQRYQRSEEELRRV ...
AB000460MKVRLLRQLSAAAKVKAPSGLQGPPQAHQFISLLLEEYGALCQAARSISTFLGTLENEHLKKFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIRLGTTTHDTCSEDTYSTLLQRYQRSEEELRRV ...
AB000461MKVRLLRQLSAAAKVKAPSGLQGPPQAHQFISLLLEEYGALCQAARSISTFLGTLENEHLKKFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIRLGTTTHDTCSEDTYSTLLQRYQRSEEELRRV ...
AB000462MAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEEERKSWMALLRRE ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.