Schema for knownBlastTab
  Database: hg18    Primary Table: knownBlastTab    Row Count: 6,786,276   Data last updated: 2009-03-03
Format description: Blast alignments to other proteins from this species.
On download server: MariaDB table dump directory
fieldexampleSQL type description
query uc009vjh.1varchar(255) Name of sequence in this assembly (query)
target uc001aal.1varchar(255) Name of sequence in other assembly (target)
identity 100float Percent identity
aliLength 246int(10) unsigned Length of alignment
mismatch 0int(10) unsigned Number of mismatches
gapOpen 0int(10) unsigned Number of gap openings
qStart 0int(10) unsigned Start in query (0 based)
qEnd 246int(10) unsigned End in query (non-inclusive)
tStart 0int(10) unsigned Start in target (0 based)
tEnd 246int(10) unsigned End in target (non-inclusive)
eValue 5e-130double Expectation value
bitScore 461double Bit score

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via knownBlastTab.query)
      hg18.ccdsKgMap.geneId (via knownBlastTab.query)
      hg18.ceBlastTab.query (via knownBlastTab.query)
      hg18.dmBlastTab.query (via knownBlastTab.query)
      hg18.drBlastTab.query (via knownBlastTab.query)
      hg18.foldUtr3.name (via knownBlastTab.query)
      hg18.foldUtr5.name (via knownBlastTab.query)
      hg18.gnfAtlas2Distance.query (via knownBlastTab.query)
      hg18.gnfAtlas2Distance.target (via knownBlastTab.query)
      hg18.gnfU95Distance.query (via knownBlastTab.query)
      hg18.gnfU95Distance.target (via knownBlastTab.query)
      hg18.humanHprdP2P.query (via knownBlastTab.query)
      hg18.humanHprdP2P.target (via knownBlastTab.query)
      hg18.humanVidalP2P.query (via knownBlastTab.query)
      hg18.humanVidalP2P.target (via knownBlastTab.query)
      hg18.humanWankerP2P.query (via knownBlastTab.query)
      hg18.humanWankerP2P.target (via knownBlastTab.query)
      hg18.keggPathway.kgID (via knownBlastTab.query)
      hg18.kgAlias.kgID (via knownBlastTab.query)
      hg18.kgColor.kgID (via knownBlastTab.query)
      hg18.kgProtAlias.kgID (via knownBlastTab.query)
      hg18.kgProtMap2.qName (via knownBlastTab.query)
      hg18.kgSpAlias.kgID (via knownBlastTab.query)
      hg18.kgTargetAli.qName (via knownBlastTab.query)
      hg18.kgTxInfo.name (via knownBlastTab.query)
      hg18.kgXref.kgID (via knownBlastTab.query)
      hg18.knownCanonToDecipher.name (via knownBlastTab.query)
      hg18.knownCanonical.protein (via knownBlastTab.query)
      hg18.knownCanonical.transcript (via knownBlastTab.query)
      hg18.knownGene.name (via knownBlastTab.query)
      hg18.knownGeneMrna.name (via knownBlastTab.query)
      hg18.knownGenePep.name (via knownBlastTab.query)
      hg18.knownIsoforms.transcript (via knownBlastTab.query)
      hg18.knownToAllenBrain.name (via knownBlastTab.query)
      hg18.knownToDecipher.name (via knownBlastTab.query)
      hg18.knownToEnsembl.name (via knownBlastTab.query)
      hg18.knownToGnf1h.name (via knownBlastTab.query)
      hg18.knownToGnfAtlas2.name (via knownBlastTab.query)
      hg18.knownToHInv.name (via knownBlastTab.query)
      hg18.knownToHprd.name (via knownBlastTab.query)
      hg18.knownToKeggEntrez.name (via knownBlastTab.query)
      hg18.knownToLocusLink.name (via knownBlastTab.query)
      hg18.knownToMupit.name (via knownBlastTab.query)
      hg18.knownToPfam.name (via knownBlastTab.query)
      hg18.knownToRefSeq.name (via knownBlastTab.query)
      hg18.knownToSuper.gene (via knownBlastTab.query)
      hg18.knownToTreefam.name (via knownBlastTab.query)
      hg18.knownToU133.name (via knownBlastTab.query)
      hg18.knownToU133Plus2.name (via knownBlastTab.query)
      hg18.knownToU95.name (via knownBlastTab.query)
      hg18.knownToVisiGene.name (via knownBlastTab.query)
      hg18.mmBlastTab.query (via knownBlastTab.query)
      hg18.rnBlastTab.query (via knownBlastTab.query)
      hg18.scBlastTab.query (via knownBlastTab.query)
      hg18.ucscScop.ucscId (via knownBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via knownBlastTab.query)
      knownGeneV39.ceBlastTab.query (via knownBlastTab.query)
      knownGeneV39.dmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.drBlastTab.query (via knownBlastTab.query)
      knownGeneV39.foldUtr3.name (via knownBlastTab.query)
      knownGeneV39.foldUtr5.name (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via knownBlastTab.query)
      knownGeneV39.kgAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgColor.kgID (via knownBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via knownBlastTab.query)
      knownGeneV39.kgXref.kgID (via knownBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.query (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.target (via knownBlastTab.query)
      knownGeneV39.knownCanonical.protein (via knownBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via knownBlastTab.query)
      knownGeneV39.knownCds.name (via knownBlastTab.query)
      knownGeneV39.knownGene.name (via knownBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via knownBlastTab.query)
      knownGeneV39.knownGenePep.name (via knownBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via knownBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via knownBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via knownBlastTab.query)
      knownGeneV39.knownToHprd.name (via knownBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via knownBlastTab.query)
      knownGeneV39.knownToMrna.name (via knownBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via knownBlastTab.query)
      knownGeneV39.knownToMupit.name (via knownBlastTab.query)
      knownGeneV39.knownToPfam.name (via knownBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via knownBlastTab.query)
      knownGeneV39.knownToSuper.gene (via knownBlastTab.query)
      knownGeneV39.knownToTag.name (via knownBlastTab.query)
      knownGeneV39.knownToU133.name (via knownBlastTab.query)
      knownGeneV39.knownToU95.name (via knownBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via knownBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via knownBlastTab.query)
      knownGeneV39.mmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.rnBlastTab.query (via knownBlastTab.query)
      knownGeneV39.scBlastTab.query (via knownBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via knownBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc009vjh.1uc001aal.110024600024602465e-130461
uc009vjh.1uc009vjh.110024600024602465e-130461
uc009vjh.1uc002loc.198.7824630024602467.999999999999999e-128453
uc009vjh.1uc002lob.198.7824630024602467.999999999999999e-128453
uc009vjh.1uc002cdf.198.7824630024602461e-127453
uc009vjh.1uc001vwk.159.592459901246322778e-80294
uc009vjh.1uc001vwj.160.57246970024672535e-79291
uc009vjh.1uc002cdd.160.98246960024672532e-77286
uc009vjh.1uc003mnx.160.57246970024672535.0000000000000004e-77285
uc009vjh.1uc001abd.160.57246970024672535.0000000000000004e-77285

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.