Schema for mmBlastTab
  Database: hg18    Primary Table: mmBlastTab    Row Count: 47,997   Data last updated: 2009-03-03
Format description: Blast alignments of Mouse genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query uc009vjh.1varchar(255) values Name of sequence in this assembly (query)
target uc008lnp.1varchar(255) values Name of sequence in other assembly (target)
identity 82.01float range Percent identity
aliLength 239int(10) unsigned range Length of alignment
mismatch 43int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 7int(10) unsigned range Start in query (0 based)
qEnd 246int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 239int(10) unsigned range End in target (non-inclusive)
eValue 1e-102double range Expectation value
bitScore 369double range Bit score

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via mmBlastTab.query)
      hg18.ccdsKgMap.geneId (via mmBlastTab.query)
      hg18.ceBlastTab.query (via mmBlastTab.query)
      hg18.dmBlastTab.query (via mmBlastTab.query)
      hg18.drBlastTab.query (via mmBlastTab.query)
      hg18.foldUtr3.name (via mmBlastTab.query)
      hg18.foldUtr5.name (via mmBlastTab.query)
      hg18.gnfAtlas2Distance.query (via mmBlastTab.query)
      hg18.gnfAtlas2Distance.target (via mmBlastTab.query)
      hg18.gnfU95Distance.query (via mmBlastTab.query)
      hg18.gnfU95Distance.target (via mmBlastTab.query)
      hg18.humanHprdP2P.query (via mmBlastTab.query)
      hg18.humanHprdP2P.target (via mmBlastTab.query)
      hg18.humanVidalP2P.query (via mmBlastTab.query)
      hg18.humanVidalP2P.target (via mmBlastTab.query)
      hg18.humanWankerP2P.query (via mmBlastTab.query)
      hg18.humanWankerP2P.target (via mmBlastTab.query)
      hg18.keggPathway.kgID (via mmBlastTab.query)
      hg18.kgAlias.kgID (via mmBlastTab.query)
      hg18.kgColor.kgID (via mmBlastTab.query)
      hg18.kgProtAlias.kgID (via mmBlastTab.query)
      hg18.kgProtMap2.qName (via mmBlastTab.query)
      hg18.kgSpAlias.kgID (via mmBlastTab.query)
      hg18.kgTargetAli.qName (via mmBlastTab.query)
      hg18.kgTxInfo.name (via mmBlastTab.query)
      hg18.kgXref.kgID (via mmBlastTab.query)
      hg18.knownBlastTab.query (via mmBlastTab.query)
      hg18.knownBlastTab.target (via mmBlastTab.query)
      hg18.knownCanonToDecipher.name (via mmBlastTab.query)
      hg18.knownCanonical.protein (via mmBlastTab.query)
      hg18.knownCanonical.transcript (via mmBlastTab.query)
      hg18.knownGene.name (via mmBlastTab.query)
      hg18.knownGeneMrna.name (via mmBlastTab.query)
      hg18.knownGenePep.name (via mmBlastTab.query)
      hg18.knownIsoforms.transcript (via mmBlastTab.query)
      hg18.knownToAllenBrain.name (via mmBlastTab.query)
      hg18.knownToDecipher.name (via mmBlastTab.query)
      hg18.knownToEnsembl.name (via mmBlastTab.query)
      hg18.knownToGnf1h.name (via mmBlastTab.query)
      hg18.knownToGnfAtlas2.name (via mmBlastTab.query)
      hg18.knownToHInv.name (via mmBlastTab.query)
      hg18.knownToHprd.name (via mmBlastTab.query)
      hg18.knownToKeggEntrez.name (via mmBlastTab.query)
      hg18.knownToLocusLink.name (via mmBlastTab.query)
      hg18.knownToMupit.name (via mmBlastTab.query)
      hg18.knownToPfam.name (via mmBlastTab.query)
      hg18.knownToRefSeq.name (via mmBlastTab.query)
      hg18.knownToSuper.gene (via mmBlastTab.query)
      hg18.knownToTreefam.name (via mmBlastTab.query)
      hg18.knownToU133.name (via mmBlastTab.query)
      hg18.knownToU133Plus2.name (via mmBlastTab.query)
      hg18.knownToU95.name (via mmBlastTab.query)
      hg18.knownToVisiGene.name (via mmBlastTab.query)
      hg18.rnBlastTab.query (via mmBlastTab.query)
      hg18.scBlastTab.query (via mmBlastTab.query)
      hg18.ucscScop.ucscId (via mmBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via mmBlastTab.query)
      knownGeneV39.ceBlastTab.query (via mmBlastTab.query)
      knownGeneV39.dmBlastTab.query (via mmBlastTab.query)
      knownGeneV39.drBlastTab.query (via mmBlastTab.query)
      knownGeneV39.foldUtr3.name (via mmBlastTab.query)
      knownGeneV39.foldUtr5.name (via mmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via mmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via mmBlastTab.query)
      knownGeneV39.kgAlias.kgID (via mmBlastTab.query)
      knownGeneV39.kgColor.kgID (via mmBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via mmBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via mmBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via mmBlastTab.query)
      knownGeneV39.kgXref.kgID (via mmBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via mmBlastTab.query)
      knownGeneV39.knownBlastTab.query (via mmBlastTab.query)
      knownGeneV39.knownBlastTab.target (via mmBlastTab.query)
      knownGeneV39.knownCanonical.protein (via mmBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via mmBlastTab.query)
      knownGeneV39.knownCds.name (via mmBlastTab.query)
      knownGeneV39.knownGene.name (via mmBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via mmBlastTab.query)
      knownGeneV39.knownGenePep.name (via mmBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via mmBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via mmBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via mmBlastTab.query)
      knownGeneV39.knownToHprd.name (via mmBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via mmBlastTab.query)
      knownGeneV39.knownToMrna.name (via mmBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via mmBlastTab.query)
      knownGeneV39.knownToMupit.name (via mmBlastTab.query)
      knownGeneV39.knownToPfam.name (via mmBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via mmBlastTab.query)
      knownGeneV39.knownToSuper.gene (via mmBlastTab.query)
      knownGeneV39.knownToTag.name (via mmBlastTab.query)
      knownGeneV39.knownToU133.name (via mmBlastTab.query)
      knownGeneV39.knownToU95.name (via mmBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via mmBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via mmBlastTab.query)
      knownGeneV39.mmBlastTab.query (via mmBlastTab.query)
      knownGeneV39.rnBlastTab.query (via mmBlastTab.query)
      knownGeneV39.scBlastTab.query (via mmBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via mmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc009vjh.1uc008lnp.182.01239430724602391e-102369
uc001aal.1uc008lnp.181.48297550730402977e-132467
uc001aaw.1uc008loa.182.05312560031203125.0000000000000005e-146514
uc001abd.1uc008loa.182.05312560031203125.0000000000000005e-146514
uc001abw.1uc008ovg.160.56712805386092272980.000000000000474.3
uc001abx.1uc008ovg.160.56712804014722272980.000000000000374.3
uc001aca.1uc008wgs.195.536272610627062501162
uc001acb.1uc008wgs.199.121141001141222362.0000000000000002e-60228
uc001acd.1uc008wgp.165.785641765055105600672
uc001ace.1uc008wgp.160.986101817060305600647

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.