Schema for knownGeneMrna
  Database: hg18    Primary Table: knownGeneMrna    Row Count: 66,803   Data last updated: 2009-03-03
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name uc001aaa.2varchar(255) values Name of gene
seq gcagggctctcttgcttagagtggtgg...longblob   mRNA sequence

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via knownGeneMrna.name)
      hg18.ccdsKgMap.geneId (via knownGeneMrna.name)
      hg18.ceBlastTab.query (via knownGeneMrna.name)
      hg18.dmBlastTab.query (via knownGeneMrna.name)
      hg18.drBlastTab.query (via knownGeneMrna.name)
      hg18.foldUtr3.name (via knownGeneMrna.name)
      hg18.foldUtr5.name (via knownGeneMrna.name)
      hg18.gnfAtlas2Distance.query (via knownGeneMrna.name)
      hg18.gnfAtlas2Distance.target (via knownGeneMrna.name)
      hg18.gnfU95Distance.query (via knownGeneMrna.name)
      hg18.gnfU95Distance.target (via knownGeneMrna.name)
      hg18.humanHprdP2P.query (via knownGeneMrna.name)
      hg18.humanHprdP2P.target (via knownGeneMrna.name)
      hg18.humanVidalP2P.query (via knownGeneMrna.name)
      hg18.humanVidalP2P.target (via knownGeneMrna.name)
      hg18.humanWankerP2P.query (via knownGeneMrna.name)
      hg18.humanWankerP2P.target (via knownGeneMrna.name)
      hg18.keggPathway.kgID (via knownGeneMrna.name)
      hg18.kgAlias.kgID (via knownGeneMrna.name)
      hg18.kgColor.kgID (via knownGeneMrna.name)
      hg18.kgProtAlias.kgID (via knownGeneMrna.name)
      hg18.kgProtMap2.qName (via knownGeneMrna.name)
      hg18.kgSpAlias.kgID (via knownGeneMrna.name)
      hg18.kgTargetAli.qName (via knownGeneMrna.name)
      hg18.kgTxInfo.name (via knownGeneMrna.name)
      hg18.kgXref.kgID (via knownGeneMrna.name)
      hg18.knownBlastTab.query (via knownGeneMrna.name)
      hg18.knownBlastTab.target (via knownGeneMrna.name)
      hg18.knownCanonToDecipher.name (via knownGeneMrna.name)
      hg18.knownCanonical.protein (via knownGeneMrna.name)
      hg18.knownCanonical.transcript (via knownGeneMrna.name)
      hg18.knownGene.name (via knownGeneMrna.name)
      hg18.knownGenePep.name (via knownGeneMrna.name)
      hg18.knownIsoforms.transcript (via knownGeneMrna.name)
      hg18.knownToAllenBrain.name (via knownGeneMrna.name)
      hg18.knownToDecipher.name (via knownGeneMrna.name)
      hg18.knownToEnsembl.name (via knownGeneMrna.name)
      hg18.knownToGnf1h.name (via knownGeneMrna.name)
      hg18.knownToGnfAtlas2.name (via knownGeneMrna.name)
      hg18.knownToHInv.name (via knownGeneMrna.name)
      hg18.knownToHprd.name (via knownGeneMrna.name)
      hg18.knownToKeggEntrez.name (via knownGeneMrna.name)
      hg18.knownToLocusLink.name (via knownGeneMrna.name)
      hg18.knownToMupit.name (via knownGeneMrna.name)
      hg18.knownToPfam.name (via knownGeneMrna.name)
      hg18.knownToRefSeq.name (via knownGeneMrna.name)
      hg18.knownToSuper.gene (via knownGeneMrna.name)
      hg18.knownToTreefam.name (via knownGeneMrna.name)
      hg18.knownToU133.name (via knownGeneMrna.name)
      hg18.knownToU133Plus2.name (via knownGeneMrna.name)
      hg18.knownToU95.name (via knownGeneMrna.name)
      hg18.knownToVisiGene.name (via knownGeneMrna.name)
      hg18.mmBlastTab.query (via knownGeneMrna.name)
      hg18.rnBlastTab.query (via knownGeneMrna.name)
      hg18.scBlastTab.query (via knownGeneMrna.name)
      hg18.ucscScop.ucscId (via knownGeneMrna.name)
      knownGeneV39.bioCycPathway.kgID (via knownGeneMrna.name)
      knownGeneV39.ceBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.dmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.drBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.foldUtr3.name (via knownGeneMrna.name)
      knownGeneV39.foldUtr5.name (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGeneMrna.name)
      knownGeneV39.kgAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgColor.kgID (via knownGeneMrna.name)
      knownGeneV39.kgProtAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgSpAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgTargetAli.qName (via knownGeneMrna.name)
      knownGeneV39.kgXref.kgID (via knownGeneMrna.name)
      knownGeneV39.knownAttrs.kgID (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.target (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.protein (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.transcript (via knownGeneMrna.name)
      knownGeneV39.knownCds.name (via knownGeneMrna.name)
      knownGeneV39.knownGene.name (via knownGeneMrna.name)
      knownGeneV39.knownGeneMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownGenePep.name (via knownGeneMrna.name)
      knownGeneV39.knownIsoforms.transcript (via knownGeneMrna.name)
      knownGeneV39.knownToEnsembl.name (via knownGeneMrna.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGeneMrna.name)
      knownGeneV39.knownToHprd.name (via knownGeneMrna.name)
      knownGeneV39.knownToLocusLink.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGeneMrna.name)
      knownGeneV39.knownToMupit.name (via knownGeneMrna.name)
      knownGeneV39.knownToPfam.name (via knownGeneMrna.name)
      knownGeneV39.knownToRefSeq.name (via knownGeneMrna.name)
      knownGeneV39.knownToSuper.gene (via knownGeneMrna.name)
      knownGeneV39.knownToTag.name (via knownGeneMrna.name)
      knownGeneV39.knownToU133.name (via knownGeneMrna.name)
      knownGeneV39.knownToU95.name (via knownGeneMrna.name)
      knownGeneV39.knownToVisiGene.name (via knownGeneMrna.name)
      knownGeneV39.knownToWikipedia.name (via knownGeneMrna.name)
      knownGeneV39.mmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.rnBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.scBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.ucscScop.ucscId (via knownGeneMrna.name)

Sample Rows
 
nameseq
uc001aaa.2gcagggctctcttgcttagagtggtggccagcgccccctgctggcgccggggcactgcagggccctcttgcttactgtatagtggtggcacgccgcctgctggcagctagggacattgcagggtcctc ...
uc009vip.1gcagggctctcttgcttagagtggtggccagcgccccctgctggcgccggggcactgcagggccctcttgcttactgtatagtggtggcacgccgcctgctggcagctagggacattgcagggtcctc ...
uc001aab.2cgacccacaggcaccatgactcctgtgaggatgcagcactccctggcaggtcagacctatgccgtgcccttcatccagccagacctgcggcgagaggaggccgtccagcagatggcggatgccctgca ...
uc009viq.1gaagcggcggcgggagcttccgggagggcggctcgcaggcaccatgactcctgtgaggatgcagcactccctggcaggtcagacctatgccgtgcccttcatccagccagacctgcggcgagaggagg ...
uc009vir.1gaagcggcggcgggagcttccgggagggcggctcgcaggcaccatgactcctgtgaggatgcagcactccctggcaggtcagacctatgccgtgcccttcatccagccagacctgcggcgagaggagg ...
uc001aac.2gaagcggcggcgggagcttccgggagggcggctcgcaggcaccatgactcctgtgaggatgcagcactccctggcaggtcagacctatgccgtgcccttcatccagccagacctgcggcgagaggagg ...
uc009vis.1acctacaagatggggtactaacaccacccccaccgcccccaccaccacccccagctcctgaggtgctggccagtgcacccccactcccaccctcaaccgcggcccctgtaggccaaggcgccaggcag ...
uc009vit.1aaggagatggtgctcttcttttttctttctgaattgtggccaccttcataccagtctgtcatggaacacttaagccgcttgagtgcctgctggtactcccagccctgccatgcctgagccccctgcac ...
uc009viu.1aaggagatggtgctcttcttttttctttctgaattgtggccaccttcataccagtctgtcatggaacacttaagccgcttgagtgcctgctggtactcccagccctgccatgcctgagccccctgcac ...
uc001aae.2aaggagatggtgctcttcttttttctttctgaattgtggccaccttcataccagtctgtcatggaacacttaagccgcttgagtgcctgctggtactcccagccctgccatgcctgagccccctgcac ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.