Schema for dmBlastTab
  Database: rn4    Primary Table: dmBlastTab    Row Count: 4,202   Data last updated: 2012-02-17
Format description: Blast alignments of Drosophila genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query RGD:2174varchar(255) values Name of sequence in this assembly (query)
target CG3725-RGvarchar(255) values Name of sequence in other assembly (target)
identity 72.6float range Percent identity
aliLength 989int(10) unsigned range Length of alignment
mismatch 270int(10) unsigned range Number of mismatches
gapOpen 1int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 988int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 989int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 1410double range Bit score

Connected Tables and Joining Fields
        rn4.affyExonTissuesGsMedianDistRgdGene2.query (via dmBlastTab.query)
      rn4.affyExonTissuesGsMedianDistRgdGene2.target (via dmBlastTab.query)
      rn4.affyExonTissuesGsMedianRgdGene2.name (via dmBlastTab.query)
      rn4.affyExonTissuesGsRgdGene2.name (via dmBlastTab.query)
      rn4.ceBlastTab.query (via dmBlastTab.query)
      rn4.drBlastTab.query (via dmBlastTab.query)
      rn4.gnfAtlas2RgdGene2Distance.query (via dmBlastTab.query)
      rn4.gnfAtlas2RgdGene2Distance.target (via dmBlastTab.query)
      rn4.hgBlastTab.query (via dmBlastTab.query)
      rn4.mmBlastTab.query (via dmBlastTab.query)
      rn4.rgdGene2.name (via dmBlastTab.query)
      rn4.rgdGene2BlastTab.query (via dmBlastTab.query)
      rn4.rgdGene2BlastTab.target (via dmBlastTab.query)
      rn4.rgdGene2Canonical.transcript (via dmBlastTab.query)
      rn4.rgdGene2Isoforms.transcript (via dmBlastTab.query)
      rn4.rgdGene2KeggPathway.rgdId (via dmBlastTab.query)
      rn4.rgdGene2Pep.name (via dmBlastTab.query)
      rn4.rgdGene2ToDescription.name (via dmBlastTab.query)
      rn4.rgdGene2ToDisplayId.name (via dmBlastTab.query)
      rn4.rgdGene2ToEnsembl.name (via dmBlastTab.query)
      rn4.rgdGene2ToGenbank.name (via dmBlastTab.query)
      rn4.rgdGene2ToGenbankAll.name (via dmBlastTab.query)
      rn4.rgdGene2ToGnfAtlas2.name (via dmBlastTab.query)
      rn4.rgdGene2ToKeggEntrez.name (via dmBlastTab.query)
      rn4.rgdGene2ToLocusLink.name (via dmBlastTab.query)
      rn4.rgdGene2ToPDB.name (via dmBlastTab.query)
      rn4.rgdGene2ToPfam.name (via dmBlastTab.query)
      rn4.rgdGene2ToRAE230.name (via dmBlastTab.query)
      rn4.rgdGene2ToRefSeq.name (via dmBlastTab.query)
      rn4.rgdGene2ToSymbol.rgdId (via dmBlastTab.query)
      rn4.rgdGene2ToU34A.name (via dmBlastTab.query)
      rn4.rgdGene2ToUniProt.name (via dmBlastTab.query)
      rn4.rgdGene2Xref.rgdGeneId (via dmBlastTab.query)
      rn4.rgdGenePathway.geneId (via dmBlastTab.query)
      rn4.scBlastTab.query (via dmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
RGD:2174CG3725-RG72.698927010988098901410
RGD:2169CG5670-RH77.7199622201710136100201520
RGD:2170CG8663-RB30.29307166129291163003e-28122
RGD:2163CG1315-RA54.814051792340424072e-123439
RGD:2162CG33486-RA36.958030417055005483e-74276
RGD:2159CG3796-RA53.236215113017836980.00000000957.4
RGD:2158CG7402-RA37.525252861139527275479e-93337
RGD:2156CG1487-RA60.1942713253398444652e-109392
RGD:2154CG11987-RA63.78381130563441133891e-131467
RGD:2152CG2219-RA63.821525509161131657e-53203

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.