Schema for gnfAtlas2RgdGene2Distance
  Database: rn4    Primary Table: gnfAtlas2RgdGene2Distance    Row Count: 3,818,000   Data last updated: 2010-10-18
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query RGD:631416varchar(255) Query gene. Indexed
target RGD:631416varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        rn4.affyExonTissuesGsMedianDistRgdGene2.query (via gnfAtlas2RgdGene2Distance.query)
      rn4.affyExonTissuesGsMedianDistRgdGene2.target (via gnfAtlas2RgdGene2Distance.query)
      rn4.affyExonTissuesGsMedianRgdGene2.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.affyExonTissuesGsRgdGene2.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.ceBlastTab.query (via gnfAtlas2RgdGene2Distance.query)
      rn4.dmBlastTab.query (via gnfAtlas2RgdGene2Distance.query)
      rn4.drBlastTab.query (via gnfAtlas2RgdGene2Distance.query)
      rn4.hgBlastTab.query (via gnfAtlas2RgdGene2Distance.query)
      rn4.mmBlastTab.query (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2BlastTab.query (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2BlastTab.target (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2Canonical.transcript (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2Isoforms.transcript (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2KeggPathway.rgdId (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2Pep.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToDescription.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToDisplayId.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToEnsembl.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToGenbank.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToGenbankAll.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToGnfAtlas2.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToKeggEntrez.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToLocusLink.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToPDB.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToPfam.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToRAE230.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToRefSeq.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToSymbol.rgdId (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToU34A.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2ToUniProt.name (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGene2Xref.rgdGeneId (via gnfAtlas2RgdGene2Distance.query)
      rn4.rgdGenePathway.geneId (via gnfAtlas2RgdGene2Distance.query)
      rn4.scBlastTab.query (via gnfAtlas2RgdGene2Distance.query)

Sample Rows
 
querytargetdistance
RGD:631416RGD:6314160
RGD:631416RGD:619460.432568
RGD:631416RGD:13100020.442955
RGD:631416RGD:673990.447182
RGD:631416RGD:13071370.447205
RGD:631416RGD:22900.449659
RGD:631416RGD:618560.450159
RGD:631416RGD:13108900.453023
RGD:631416RGD:6206150.457864
RGD:631416RGD:7085400.463886

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.