Schema for xenoMrna
  Database: canFam4    Primary Table: xenoMrna    Row Count: 4,939,843   Data last updated: 2020-05-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 586smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 175int(10) unsigned Number of bases that match that aren't repeats
misMatches 37int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 430int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 277int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JV461138varchar(255) Query sequence name
qSize 816int(10) unsigned Query sequence size
qStart 139int(10) unsigned Alignment start position in query
qEnd 781int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 123556469int(10) unsigned Target sequence size
tStart 200345int(10) unsigned Alignment start position in target
tEnd 200834int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 92,24,96,longblob Size of each block
qStarts 139,290,685,longblob Start of each block in query.
tStarts 200345,200504,200738,longblob Start of each block in target.

Connected Tables and Joining Fields
        canFam4.all_est.qName (via xenoMrna.qName)
      canFam4.all_mrna.qName (via xenoMrna.qName)
      canFam4.refGene.name (via xenoMrna.qName)
      canFam4.refSeqAli.qName (via xenoMrna.qName)
      canFam4.xenoRefFlat.name (via xenoMrna.qName)
      canFam4.xenoRefGene.name (via xenoMrna.qName)
      canFam4.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
586175370024302277++JV461138816139781chr1123556469200345200834392,24,96,139,290,685,200345,200504,200738,
586198360052775286+-JV65354158064575chr1123556469209090209610778,34,7,31,22,17,45,64,377,412,419,458,481,530,123346859,123347171,123347219,123347229,123347269,123347291,123347334,
586115270022462332+-KA49868442631419chr1123556469209099209573345,60,37,31,300,382,123346896,123347231,123347333,
733229434003246104770207+-LP896405829488281chr11235564692090992829695318,207,73,117,134,59,98,80,120,110,66,73,109,136,133,70,88,185,7,21,39,34,17,13,13,33,173,129,81,138,156,171,69,12,52,42,60,11,5 ...8,53,260,333,450,734,793,891,971,1091,1201,1267,1340,1449,1608,1741,1811,1899,2105,2113,2235,2275,2385,2403,2429,2501,2799,2972, ...123273500,123273518,123305817,123307660,123308596,123309601,123311606,123313610,123314694,123315879,123316890,123317266,12331955 ...
58626551002818+-EZ48166238845369chr11235564692095292098533201,58,57,45,253,312,123346616,123346825,123346883,
5866117000000+-JU48803631232110chr1123556469209532209610178,32,123346859,
58691800239236+-JU19758523424162chr1123556469209859209994336,33,30,24,70,132,123346475,123346518,123346580,
58615422002727+-EZ462419420221404chr1123556469209921210104419,85,36,36,221,240,328,368,123346365,123346390,123346475,123346512,
586156540023291540++KA314671804163702chr1123556469209925210675327,129,54,163,195,648,209925,209952,210621,
5869138000000++JU81732538526155chr11235564692099522100811129,26,209952,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.