Schema for xenoRefFlat
  Database: canFam4    Primary Table: xenoRefFlat    Row Count: 235,387   Data last updated: 2020-05-05
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ENPP1varchar(255) values Name of gene as it appears in genome browser.
name NM_006208varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 209099int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 282969int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 213258int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 282957int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 39int(10) unsigned range Number of exons
exonStarts 209099,209161,209268,209547...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 209135,209251,209323,209574...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        canFam4.xenoMrna.qName (via xenoRefFlat.name)
      canFam4.xenoRefGene.name (via xenoRefFlat.name)
      canFam4.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ENPP1NM_006208chr1-20909928296921325828295739209099,209161,209268,209547,209652,209708,209987,210617,212289,212409,212459,212668,212739,212899,213080,213111,213258,215332,21 ...209135,209251,209323,209574,209678,209816,210023,210656,212331,212419,212510,212679,212799,212994,213092,213180,213429,215488,21 ...
ENPP1NM_001206212chr1-21287528296821325828295728212875,213094,213130,213226,215334,217063,218028,222706,224396,224499,227333,229126,229941,231361,234438,236801,239130,239513,24 ...212992,213118,213141,213430,215495,217196,218109,222836,224496,224553,227504,229214,230011,231494,234574,236910,239203,239579,24 ...
Enpp1NM_053535chr1-21325828294821325828294825213258,215422,217063,218028,222705,224408,227382,229126,229941,231361,234443,236803,239132,239513,240478,241656,242779,244635,24 ...213429,215495,217196,218108,222836,224531,227504,229214,230011,231489,234576,236912,239203,239577,240591,241775,242856,244640,24 ...
ENPP1NM_001168933chr1-21325828295121325828295123213258,215334,217058,218028,222707,224396,227334,229126,229941,231361,234438,236801,239130,239513,240480,241655,242779,244765,24 ...213429,215488,217196,218109,222836,224553,227504,229214,230011,231494,234574,236910,239203,239579,240590,241775,242859,244863,24 ...
ENPP1NM_001082742chr1-21325828298221325828298224213258,215332,217067,218028,222706,224396,227334,229126,229943,231356,231360,234438,236801,239130,239513,240480,241655,242779,24 ...213429,215497,217196,218109,222836,224552,227504,229216,230008,231358,231494,234574,236910,239203,239579,240590,241775,242859,24 ...
Enpp1NM_001308327chr1-21325828314721325828285225213258,215336,217063,218028,222705,224408,227382,229126,229941,231361,234438,236803,239132,239513,240478,241656,242779,244635,24 ...213429,215495,217196,218108,222836,224531,227504,229214,230011,231489,234576,236912,239203,239577,240591,241775,242856,244640,24 ...
Enpp1NM_001308329chr1-21325828314721325823952025213258,215336,217063,218028,222705,224408,227382,229126,229941,231361,234438,236803,239132,239513,240478,241656,242779,244635,24 ...213429,215495,217196,218108,222836,224531,227504,229214,230011,231489,234576,236912,239177,239577,240591,241775,242856,244640,24 ...
Enpp1NM_008813chr1-21325828314721325828285225213258,215336,217063,218028,222705,224408,227382,229126,229941,231361,234438,236803,239132,239513,240478,241656,242779,244635,24 ...213429,215495,217196,218108,222836,224531,227504,229214,230011,231489,234576,236912,239203,239577,240591,241775,242856,244640,24 ...
PARD6GNM_032510chr1+45492653599945511753418715454926,455078,478794,533354,533395,534088,534440,535143,535261,535392,535472,535652,535830,535860,535945,455000,455189,479017,533394,533873,534187,534497,535221,535289,535443,535510,535709,535851,535887,535999,
Pard6gNM_053117chr1+4549735339024551175339024454973,455081,478794,533354,455000,455189,479017,533902,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.