Schema for xenoRefSeqAli
  Database: canFam4    Primary Table: xenoRefSeqAli    Row Count: 235,387   Data last updated: 2020-05-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 3053int(10) unsigned range Number of bases that match that aren't repeats
misMatches 412int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 23int(10) unsigned range Number of inserts in query
qBaseInsert 3956int(10) unsigned range Number of bases inserted in query
tNumInsert 41int(10) unsigned range Number of inserts in target
tBaseInsert 70405int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_006208varchar(255) values Query sequence name
qSize 7438int(10) unsigned range Query sequence size
qStart 4int(10) unsigned range Alignment start position in query
qEnd 7425int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 123556469int(10) unsigned range Target sequence size
tStart 209099int(10) unsigned range Alignment start position in target
tEnd 282969int(10) unsigned range Alignment end position in target
blockCount 45int(10) unsigned range Number of blocks in alignment
blockSizes 18,207,73,117,131,56,98,80,...longblob   Size of each block
qStarts 4,49,256,329,446,577,633,73...longblob   Start of each block in query.
tStarts 123273500,123273518,1233058...longblob   Start of each block in target.

Connected Tables and Joining Fields
        canFam4.all_est.qName (via xenoRefSeqAli.qName)
      canFam4.all_mrna.qName (via xenoRefSeqAli.qName)
      canFam4.refGene.name (via xenoRefSeqAli.qName)
      canFam4.refSeqAli.qName (via xenoRefSeqAli.qName)
      canFam4.xenoMrna.qName (via xenoRefSeqAli.qName)
      canFam4.xenoRefFlat.name (via xenoRefSeqAli.qName)
      canFam4.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
733053412002339564170405+-NM_006208743847425chr11235564692090992829694518,207,73,117,131,56,98,80,120,110,66,73,109,136,133,70,88,170,173,129,81,138,156,171,69,12,52,42,60,11,51,10,42,39,36,108,26,27 ...4,49,256,329,446,577,633,731,811,931,1041,1107,1180,1289,1448,1581,1651,1739,1943,2116,2246,2327,2467,2623,2833,2925,3028,3080,3 ...123273500,123273518,123305817,123307660,123308596,123309604,123311606,123313610,123314694,123315879,123316890,123317266,12331955 ...
73252131902883002667225+-NM_001206212318153173chr11235564692128752829682817,207,73,117,126,61,98,80,120,108,66,73,109,136,133,70,88,171,54,100,130,81,133,161,204,11,24,117,5,49,256,329,446,572,633,731,811,931,1041,1107,1180,1289,1448,1581,1651,1739,1959,2013,2113,2243,2324,2457,2619,2872,2901,3056,123273501,123273518,123305817,123307660,123308596,123309599,123311606,123313610,123314694,123315879,123316890,123317266,12331955 ...
7319464410083222467303+-NM_0535352721122721chr11235564692132582829482548,108,73,116,117,20,95,5,77,119,113,64,71,109,133,128,70,88,122,123,131,80,133,73,171,12,78,186,259,381,505,564,659,664,741,860,973,1037,1108,1217,1383,1511,1581,1669,1908,2043,2174,2254,2387,2550,123273521,123273617,123305817,123307660,123308601,123309602,123311607,123311829,123313613,123314694,123315878,123316892,12331726 ...
732358309005782267026+-NM_0011689332778332778chr112355646921325828295123207,73,117,131,56,98,80,120,110,66,73,109,136,133,70,88,170,157,129,81,138,154,171,33,240,313,430,561,617,715,795,915,1025,1091,1164,1273,1432,1565,1635,1723,1943,2100,2230,2311,2451,2607,123273518,123305817,123307660,123308596,123309604,123311606,123313610,123314694,123315879,123316890,123317266,123319559,12332189 ...
732337362004772367025+-NM_001082742278152781chr112355646921325828298224238,73,117,131,57,96,80,120,110,66,73,109,136,134,2,65,90,170,156,130,81,129,165,171,5,243,316,433,564,621,718,798,918,1028,1094,1167,1276,1435,1569,1571,1636,1726,1947,2103,2233,2314,2445,2610,123273487,123305817,123307660,123308596,123309604,123311607,123313610,123314694,123315879,123316890,123317266,123319559,12332189 ...
7320574640073582467368+-NM_0013083276794102889chr11235564692132582831472547,108,73,116,117,63,96,5,77,119,113,64,71,109,138,128,70,88,122,123,131,80,133,159,171,10,246,354,427,549,668,731,827,832,909,1028,1141,1205,1276,1385,1551,1679,1749,1837,2076,2211,2342,2422,2555,2718,123273322,123273617,123305817,123307660,123308601,123309597,123311606,123311829,123313613,123314694,123315878,123316892,12331726 ...
7320314640073552467394+-NM_0013083296765102860chr11235564692132582831472547,108,73,116,117,63,96,5,77,119,113,64,45,109,138,128,70,88,122,123,131,80,133,159,171,10,246,354,427,549,668,731,827,832,909,1028,1141,1205,1250,1359,1525,1653,1723,1811,2047,2182,2313,2393,2526,2689,123273322,123273617,123305817,123307660,123308601,123309597,123311606,123311829,123313613,123314694,123315878,123316892,12331729 ...
7320574640073552467368+-NM_0088136791102886chr11235564692132582831472547,108,73,116,117,63,96,5,77,119,113,64,71,109,138,128,70,88,122,123,131,80,133,159,171,10,246,354,427,549,668,731,827,832,909,1028,1141,1205,1276,1385,1551,1679,1749,1837,2073,2208,2339,2419,2552,2715,123273322,123273617,123305817,123307660,123308601,123309597,123311606,123311829,123313613,123314694,123315878,123316892,12331726 ...
731232193001323921779648++NM_032510383603817chr11235564694549265359991974,111,223,40,478,43,50,57,33,26,15,28,51,13,24,57,21,27,54,0,127,238,461,505,1204,1247,1608,3010,3043,3071,3135,3257,3334,3347,3483,3655,3681,3763,454926,455078,478794,533354,533395,534088,534137,534440,535143,535180,535206,535261,535392,535472,535486,535652,535830,535860,53 ...
7374815500268478026++NM_0531173143511022chr1123556469454973533902527,108,223,59,486,51,140,248,471,536,454973,455081,478794,533354,533416,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.