Schema for gnfAtlas2Distance
  Database: hg19    Primary Table: gnfAtlas2Distance    Row Count: 144,685,000   Data last updated: 2024-08-23
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query ENST00000376567.6_6varchar(255) Query gene. Indexed
target ENST00000376567.6_6varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      hg19.ceBlastTab.query (via gnfAtlas2Distance.query)
      hg19.dmBlastTab.query (via gnfAtlas2Distance.query)
      hg19.drBlastTab.query (via gnfAtlas2Distance.query)
      hg19.foldUtr3.name (via gnfAtlas2Distance.query)
      hg19.foldUtr5.name (via gnfAtlas2Distance.query)
      hg19.gnfU95Distance.query (via gnfAtlas2Distance.query)
      hg19.gnfU95Distance.target (via gnfAtlas2Distance.query)
      hg19.humanHprdP2P.query (via gnfAtlas2Distance.query)
      hg19.humanHprdP2P.target (via gnfAtlas2Distance.query)
      hg19.humanVidalP2P.query (via gnfAtlas2Distance.query)
      hg19.humanVidalP2P.target (via gnfAtlas2Distance.query)
      hg19.humanWankerP2P.query (via gnfAtlas2Distance.query)
      hg19.humanWankerP2P.target (via gnfAtlas2Distance.query)
      hg19.keggPathway.kgID (via gnfAtlas2Distance.query)
      hg19.kgAlias.kgID (via gnfAtlas2Distance.query)
      hg19.kgColor.kgID (via gnfAtlas2Distance.query)
      hg19.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      hg19.kgProtMap2.qName (via gnfAtlas2Distance.query)
      hg19.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      hg19.kgTargetAli.qName (via gnfAtlas2Distance.query)
      hg19.kgTxInfo.name (via gnfAtlas2Distance.query)
      hg19.kgXref.kgID (via gnfAtlas2Distance.query)
      hg19.knownAttrs.kgID (via gnfAtlas2Distance.query)
      hg19.knownBlastTab.query (via gnfAtlas2Distance.query)
      hg19.knownBlastTab.target (via gnfAtlas2Distance.query)
      hg19.knownCanonToDecipher.name (via gnfAtlas2Distance.query)
      hg19.knownCanonical.transcript (via gnfAtlas2Distance.query)
      hg19.knownCds.name (via gnfAtlas2Distance.query)
      hg19.knownGene.name (via gnfAtlas2Distance.query)
      hg19.knownGeneMrna.name (via gnfAtlas2Distance.query)
      hg19.knownGenePep.name (via gnfAtlas2Distance.query)
      hg19.knownGeneTxMrna.name (via gnfAtlas2Distance.query)
      hg19.knownGeneTxPep.name (via gnfAtlas2Distance.query)
      hg19.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      hg19.knownToAllenBrain.name (via gnfAtlas2Distance.query)
      hg19.knownToDecipher.name (via gnfAtlas2Distance.query)
      hg19.knownToEnsembl.name (via gnfAtlas2Distance.query)
      hg19.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      hg19.knownToHInv.name (via gnfAtlas2Distance.query)
      hg19.knownToHprd.name (via gnfAtlas2Distance.query)
      hg19.knownToKeggEntrez.name (via gnfAtlas2Distance.query)
      hg19.knownToLocusLink.name (via gnfAtlas2Distance.query)
      hg19.knownToLynx.name (via gnfAtlas2Distance.query)
      hg19.knownToMrna.name (via gnfAtlas2Distance.query)
      hg19.knownToMrnaSingle.name (via gnfAtlas2Distance.query)
      hg19.knownToMupit.name (via gnfAtlas2Distance.query)
      hg19.knownToNextProt.name (via gnfAtlas2Distance.query)
      hg19.knownToPfam.name (via gnfAtlas2Distance.query)
      hg19.knownToRefSeq.name (via gnfAtlas2Distance.query)
      hg19.knownToSuper.gene (via gnfAtlas2Distance.query)
      hg19.knownToTag.name (via gnfAtlas2Distance.query)
      hg19.knownToTreefam.name (via gnfAtlas2Distance.query)
      hg19.knownToU133.name (via gnfAtlas2Distance.query)
      hg19.knownToU133Plus2.name (via gnfAtlas2Distance.query)
      hg19.knownToU95.name (via gnfAtlas2Distance.query)
      hg19.knownToVisiGene.name (via gnfAtlas2Distance.query)
      hg19.knownToWikipedia.name (via gnfAtlas2Distance.query)
      hg19.mmBlastTab.query (via gnfAtlas2Distance.query)
      hg19.rnBlastTab.query (via gnfAtlas2Distance.query)
      hg19.scBlastTab.query (via gnfAtlas2Distance.query)
      hg19.ucscScop.ucscId (via gnfAtlas2Distance.query)
      knownGeneV39.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.ceBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.dmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.drBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr3.name (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr5.name (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gnfAtlas2Distance.query)
      knownGeneV39.kgAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgColor.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgTargetAli.qName (via gnfAtlas2Distance.query)
      knownGeneV39.kgXref.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownAttrs.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.target (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.protein (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownCds.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGeneMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGenePep.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownToEnsembl.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToHprd.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToLocusLink.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrnaSingle.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMupit.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToPfam.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToRefSeq.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToSuper.gene (via gnfAtlas2Distance.query)
      knownGeneV39.knownToTag.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU133.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU95.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToVisiGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToWikipedia.name (via gnfAtlas2Distance.query)
      knownGeneV39.mmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.rnBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.scBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.ucscScop.ucscId (via gnfAtlas2Distance.query)

Sample Rows
 
querytargetdistance
ENST00000376567.6_6ENST00000376567.6_60
ENST00000376567.6_6ENST00000508312.5_40.203291
ENST00000376567.6_6ENST00000513240.5_50.203291
ENST00000376567.6_6ENST00000484556.1_10.203291
ENST00000376567.6_6ENST00000417521.5_10.203291
ENST00000376567.6_6ENST00000514434.1_10.203291
ENST00000376567.6_6ENST00000513514.2_10.203291
ENST00000376567.6_6ENST00000465966.4_10.203291
ENST00000376567.6_6ENST00000514534.1_10.203291
ENST00000376567.6_6ENST00000508472.5_10.203291

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.