Schema for dmBlastTab
  Database: mm39    Primary Table: dmBlastTab    Row Count: 6,029   Data last updated: 2024-08-15
Format description: Blast alignments of Drosophila genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query ENSMUST00000047357.10varchar(255) values Name of sequence in this assembly (query)
target FBtr0085357varchar(255) values Name of sequence in other assembly (target)
identity 52.93float range Percent identity
aliLength 801int(10) unsigned range Length of alignment
mismatch 313int(10) unsigned range Number of mismatches
gapOpen 11int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 782int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 756int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 801double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via dmBlastTab.query)
      knownGeneV39.ceBlastTab.query (via dmBlastTab.query)
      knownGeneV39.dmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.drBlastTab.query (via dmBlastTab.query)
      knownGeneV39.foldUtr3.name (via dmBlastTab.query)
      knownGeneV39.foldUtr5.name (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via dmBlastTab.query)
      knownGeneV39.kgAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgColor.kgID (via dmBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via dmBlastTab.query)
      knownGeneV39.kgXref.kgID (via dmBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.query (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.target (via dmBlastTab.query)
      knownGeneV39.knownCanonical.protein (via dmBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via dmBlastTab.query)
      knownGeneV39.knownCds.name (via dmBlastTab.query)
      knownGeneV39.knownGene.name (via dmBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via dmBlastTab.query)
      knownGeneV39.knownGenePep.name (via dmBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via dmBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via dmBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via dmBlastTab.query)
      knownGeneV39.knownToHprd.name (via dmBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via dmBlastTab.query)
      knownGeneV39.knownToMrna.name (via dmBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via dmBlastTab.query)
      knownGeneV39.knownToMupit.name (via dmBlastTab.query)
      knownGeneV39.knownToPfam.name (via dmBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via dmBlastTab.query)
      knownGeneV39.knownToSuper.gene (via dmBlastTab.query)
      knownGeneV39.knownToTag.name (via dmBlastTab.query)
      knownGeneV39.knownToU133.name (via dmBlastTab.query)
      knownGeneV39.knownToU95.name (via dmBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via dmBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via dmBlastTab.query)
      knownGeneV39.mmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.rnBlastTab.query (via dmBlastTab.query)
      knownGeneV39.scBlastTab.query (via dmBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via dmBlastTab.query)
      mm39.bioCycPathway.kgID (via dmBlastTab.query)
      mm39.ceBlastTab.query (via dmBlastTab.query)
      mm39.drBlastTab.query (via dmBlastTab.query)
      mm39.foldUtr3.name (via dmBlastTab.query)
      mm39.foldUtr5.name (via dmBlastTab.query)
      mm39.hgBlastTab.query (via dmBlastTab.query)
      mm39.kgAlias.kgID (via dmBlastTab.query)
      mm39.kgColor.kgID (via dmBlastTab.query)
      mm39.kgProtAlias.kgID (via dmBlastTab.query)
      mm39.kgSpAlias.kgID (via dmBlastTab.query)
      mm39.kgTargetAli.qName (via dmBlastTab.query)
      mm39.kgXref.kgID (via dmBlastTab.query)
      mm39.knownAttrs.kgID (via dmBlastTab.query)
      mm39.knownBlastTab.query (via dmBlastTab.query)
      mm39.knownBlastTab.target (via dmBlastTab.query)
      mm39.knownCanonical.transcript (via dmBlastTab.query)
      mm39.knownCds.name (via dmBlastTab.query)
      mm39.knownGene.name (via dmBlastTab.query)
      mm39.knownGeneMrna.name (via dmBlastTab.query)
      mm39.knownIsoforms.transcript (via dmBlastTab.query)
      mm39.knownToEnsembl.name (via dmBlastTab.query)
      mm39.knownToLocusLink.name (via dmBlastTab.query)
      mm39.knownToMrna.name (via dmBlastTab.query)
      mm39.knownToMrnaSingle.name (via dmBlastTab.query)
      mm39.knownToMupit.name (via dmBlastTab.query)
      mm39.knownToNextProt.name (via dmBlastTab.query)
      mm39.knownToPfam.name (via dmBlastTab.query)
      mm39.knownToRefSeq.name (via dmBlastTab.query)
      mm39.knownToSuper.gene (via dmBlastTab.query)
      mm39.knownToTag.name (via dmBlastTab.query)
      mm39.knownToVisiGene.name (via dmBlastTab.query)
      mm39.knownToWikipedia.name (via dmBlastTab.query)
      mm39.rnBlastTab.query (via dmBlastTab.query)
      mm39.scBlastTab.query (via dmBlastTab.query)
      mm39.ucscScop.ucscId (via dmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
ENSMUST00000047357.10FBtr008535752.9380131311078207560801
ENSMUST00000190686.7FBtr007280749.1167784016401635e-27122
ENSMUST00000007790.11FBtr008511636.112161252108324452485e-31132
ENSMUST00000037023.9FBtr033468178.57561200560566e-2195.9
ENSMUST00000027131.6FBtr034560133.52528255143538282066917e-63239
ENSMUST00000073076.12FBtr007365851.11632298371692687001e-173607
ENSMUST00000180792.8FBtr008043528.8620113420193212214e-24110
ENSMUST00000171010.8FBtr007323451.372921304028902835e-69258
ENSMUST00000170909.2FBtr008774159.462227931153341653793e-50196
ENSMUST00000071982.7FBtr007161034.436103621838626546483e-88323

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.