Schema for drBlastTab
  Database: rn3    Primary Table: drBlastTab    Row Count: 6,701   Data last updated: 2004-04-07
Format description: Blast alignments of Zebrafish genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB000098varchar(255) values Name of sequence in this assembly (query)
target ENSDARP00000003009varchar(255) values Name of sequence in other assembly (target)
identity 20.05float range Percent identity
aliLength 389int(10) unsigned range Length of alignment
mismatch 287int(10) unsigned range Number of mismatches
gapOpen 5int(10) unsigned range Number of gap openings
qStart 29int(10) unsigned range Start in query (0 based)
qEnd 401int(10) unsigned range End in query (non-inclusive)
tStart 73int(10) unsigned range Start in target (0 based)
tEnd 455int(10) unsigned range End in target (non-inclusive)
eValue 0.000037double range Expectation value
bitScore 46.21double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via drBlastTab.query)
      knownGeneV39.ceBlastTab.query (via drBlastTab.query)
      knownGeneV39.dmBlastTab.query (via drBlastTab.query)
      knownGeneV39.drBlastTab.query (via drBlastTab.query)
      knownGeneV39.foldUtr3.name (via drBlastTab.query)
      knownGeneV39.foldUtr5.name (via drBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via drBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via drBlastTab.query)
      knownGeneV39.kgAlias.kgID (via drBlastTab.query)
      knownGeneV39.kgColor.kgID (via drBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via drBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via drBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via drBlastTab.query)
      knownGeneV39.kgXref.kgID (via drBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via drBlastTab.query)
      knownGeneV39.knownBlastTab.query (via drBlastTab.query)
      knownGeneV39.knownBlastTab.target (via drBlastTab.query)
      knownGeneV39.knownCanonical.protein (via drBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via drBlastTab.query)
      knownGeneV39.knownCds.name (via drBlastTab.query)
      knownGeneV39.knownGene.name (via drBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via drBlastTab.query)
      knownGeneV39.knownGenePep.name (via drBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via drBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via drBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via drBlastTab.query)
      knownGeneV39.knownToHprd.name (via drBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via drBlastTab.query)
      knownGeneV39.knownToMrna.name (via drBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via drBlastTab.query)
      knownGeneV39.knownToMupit.name (via drBlastTab.query)
      knownGeneV39.knownToPfam.name (via drBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via drBlastTab.query)
      knownGeneV39.knownToSuper.gene (via drBlastTab.query)
      knownGeneV39.knownToTag.name (via drBlastTab.query)
      knownGeneV39.knownToU133.name (via drBlastTab.query)
      knownGeneV39.knownToU95.name (via drBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via drBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via drBlastTab.query)
      knownGeneV39.mmBlastTab.query (via drBlastTab.query)
      knownGeneV39.rnBlastTab.query (via drBlastTab.query)
      knownGeneV39.scBlastTab.query (via drBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via drBlastTab.query)
      rn3.dmBlastTab.query (via drBlastTab.query)
      rn3.dupSpMrna.mrnaID (via drBlastTab.query)
      rn3.gnfAtlas2Distance.query (via drBlastTab.query)
      rn3.gnfAtlas2Distance.target (via drBlastTab.query)
      rn3.hgBlastTab.query (via drBlastTab.query)
      rn3.keggPathway.kgID (via drBlastTab.query)
      rn3.kgAlias.kgID (via drBlastTab.query)
      rn3.kgProtAlias.kgID (via drBlastTab.query)
      rn3.kgSpAlias.kgID (via drBlastTab.query)
      rn3.kgXref.kgID (via drBlastTab.query)
      rn3.knownBlastTab.query (via drBlastTab.query)
      rn3.knownBlastTab.target (via drBlastTab.query)
      rn3.knownCanonical.transcript (via drBlastTab.query)
      rn3.knownGene.name (via drBlastTab.query)
      rn3.knownGeneLink.name (via drBlastTab.query)
      rn3.knownGeneMrna.name (via drBlastTab.query)
      rn3.knownGenePep.name (via drBlastTab.query)
      rn3.knownIsoforms.transcript (via drBlastTab.query)
      rn3.knownToEnsembl.name (via drBlastTab.query)
      rn3.knownToGnfAtlas2.name (via drBlastTab.query)
      rn3.knownToLocusLink.name (via drBlastTab.query)
      rn3.knownToPfam.name (via drBlastTab.query)
      rn3.knownToRefSeq.name (via drBlastTab.query)
      rn3.knownToSuper.gene (via drBlastTab.query)
      rn3.scBlastTab.query (via drBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000098ENSDARP0000000300920.05389287529401734550.00003746.21
AB000113ENSDARP0000001786461.66122132559506120635.2
AB000199ENSDARP0000002551633.3335720351033363623.4e-34142.1
AB000215ENSDARP0000001431551.7562824413061505823e-155545.4
AB000216ENSDARP0000001010459.738022851018698207700903.7
AB000280ENSDARP0000000039655.42323131341361463591.1e-70264.2
AB000362ENSDARP0000002075068.6783260285201031.4e-27118.6
AB000489ENSDARP0000000310557.2769523319067906470654.8
AB000491ENSDARP0000002020790.21286262729102867e-122433.7
AB000507ENSDARP0000001571449.825512711126572626.6e-72266.9

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.