Schema for hgBlastTab
  Database: rn3    Primary Table: hgBlastTab    Row Count: 7,286   Data last updated: 2004-04-07
Format description: Blast alignments of Human genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB000098varchar(255) values Name of sequence in this assembly (query)
target BC021217varchar(255) values Name of sequence in other assembly (target)
identity 48.65float range Percent identity
aliLength 481int(10) unsigned range Length of alignment
mismatch 216int(10) unsigned range Number of mismatches
gapOpen 11int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 458int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 473int(10) unsigned range End in target (non-inclusive)
eValue 9.999999999999999e-85double range Expectation value
bitScore 311.2double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via hgBlastTab.query)
      knownGeneV39.ceBlastTab.query (via hgBlastTab.query)
      knownGeneV39.dmBlastTab.query (via hgBlastTab.query)
      knownGeneV39.drBlastTab.query (via hgBlastTab.query)
      knownGeneV39.foldUtr3.name (via hgBlastTab.query)
      knownGeneV39.foldUtr5.name (via hgBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via hgBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via hgBlastTab.query)
      knownGeneV39.kgAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgColor.kgID (via hgBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via hgBlastTab.query)
      knownGeneV39.kgXref.kgID (via hgBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via hgBlastTab.query)
      knownGeneV39.knownBlastTab.query (via hgBlastTab.query)
      knownGeneV39.knownBlastTab.target (via hgBlastTab.query)
      knownGeneV39.knownCanonical.protein (via hgBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via hgBlastTab.query)
      knownGeneV39.knownCds.name (via hgBlastTab.query)
      knownGeneV39.knownGene.name (via hgBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via hgBlastTab.query)
      knownGeneV39.knownGenePep.name (via hgBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via hgBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via hgBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via hgBlastTab.query)
      knownGeneV39.knownToHprd.name (via hgBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via hgBlastTab.query)
      knownGeneV39.knownToMrna.name (via hgBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via hgBlastTab.query)
      knownGeneV39.knownToMupit.name (via hgBlastTab.query)
      knownGeneV39.knownToPfam.name (via hgBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via hgBlastTab.query)
      knownGeneV39.knownToSuper.gene (via hgBlastTab.query)
      knownGeneV39.knownToTag.name (via hgBlastTab.query)
      knownGeneV39.knownToU133.name (via hgBlastTab.query)
      knownGeneV39.knownToU95.name (via hgBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via hgBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via hgBlastTab.query)
      knownGeneV39.mmBlastTab.query (via hgBlastTab.query)
      knownGeneV39.rnBlastTab.query (via hgBlastTab.query)
      knownGeneV39.scBlastTab.query (via hgBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via hgBlastTab.query)
      rn3.dmBlastTab.query (via hgBlastTab.query)
      rn3.drBlastTab.query (via hgBlastTab.query)
      rn3.dupSpMrna.mrnaID (via hgBlastTab.query)
      rn3.gnfAtlas2Distance.query (via hgBlastTab.query)
      rn3.gnfAtlas2Distance.target (via hgBlastTab.query)
      rn3.keggPathway.kgID (via hgBlastTab.query)
      rn3.kgAlias.kgID (via hgBlastTab.query)
      rn3.kgProtAlias.kgID (via hgBlastTab.query)
      rn3.kgSpAlias.kgID (via hgBlastTab.query)
      rn3.kgXref.kgID (via hgBlastTab.query)
      rn3.knownBlastTab.query (via hgBlastTab.query)
      rn3.knownBlastTab.target (via hgBlastTab.query)
      rn3.knownCanonical.transcript (via hgBlastTab.query)
      rn3.knownGene.name (via hgBlastTab.query)
      rn3.knownGeneLink.name (via hgBlastTab.query)
      rn3.knownGeneMrna.name (via hgBlastTab.query)
      rn3.knownGenePep.name (via hgBlastTab.query)
      rn3.knownIsoforms.transcript (via hgBlastTab.query)
      rn3.knownToEnsembl.name (via hgBlastTab.query)
      rn3.knownToGnfAtlas2.name (via hgBlastTab.query)
      rn3.knownToLocusLink.name (via hgBlastTab.query)
      rn3.knownToPfam.name (via hgBlastTab.query)
      rn3.knownToRefSeq.name (via hgBlastTab.query)
      rn3.knownToSuper.gene (via hgBlastTab.query)
      rn3.scBlastTab.query (via hgBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000098BC02121748.6548121611045804739.999999999999999e-85311.2
AB000107BC01585029.67209134124233232193.4e-23105.5
AB000113AK07501482.716191070061906190879
AB000199BC00492977.99368501033703685e-134474.6
AB000215AJ25046090.286175630615061501074.3
AB000216AK09563296.25799282186983079901496.1
AB000280AY03899981.83578865257185760705.3
AB000362BT00721098.8688100880887.300000000000001e-44173.3
AB000489BC01994491.996745137679467701237.2
AB000491BC00236710040600040604060734.6

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.