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Database: rn7 Primary Table: all_mrna Row Count: 248,138 Data last updated: 2021-03-24
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 24 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
| strand | - | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | DQ747939 | varchar(255) | values | Query sequence name |
| qSize | 24 | int(10) unsigned | range | Query sequence size |
| qStart | 0 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 24 | int(10) unsigned | range | Alignment end position in query |
| tName | chr1 | varchar(255) | values | Target sequence name |
| tSize | 260522016 | int(10) unsigned | range | Target sequence size |
| tStart | 6252 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 6276 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 24, | longblob | | Size of each block |
| qStarts | 0, | longblob | | Start of each block in query. |
| tStarts | 6252, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 585 | 24 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | DQ747939 | 24 | 0 | 24 | chr1 | 260522016 | 6252 | 6276 | 1 | 24, | 0, | 6252, |
| 585 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ610247 | 30 | 0 | 30 | chr1 | 260522016 | 14268 | 14298 | 1 | 30, | 0, | 14268, |
| 585 | 29 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ616750 | 29 | 0 | 29 | chr1 | 260522016 | 14340 | 14369 | 1 | 29, | 0, | 14340, |
| 585 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ757846 | 27 | 0 | 26 | chr1 | 260522016 | 23251 | 23277 | 1 | 26, | 0, | 23251, |
| 585 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ753126 | 26 | 0 | 26 | chr1 | 260522016 | 28258 | 28284 | 1 | 26, | 0, | 28258, |
| 585 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | DQ615682 | 31 | 0 | 30 | chr1 | 260522016 | 43666 | 43696 | 1 | 30, | 1, | 43666, |
| 585 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | DQ757846 | 27 | 0 | 26 | chr1 | 260522016 | 47524 | 47550 | 1 | 26, | 1, | 47524, |
| 585 | 24 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ732226 | 24 | 0 | 24 | chr1 | 260522016 | 61939 | 61963 | 1 | 24, | 0, | 61939, |
| 585 | 24 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ732226 | 24 | 0 | 24 | chr1 | 260522016 | 112199 | 112223 | 1 | 24, | 0, | 112199, |
| 585 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DQ760294 | 25 | 0 | 25 | chr1 | 260522016 | 127108 | 127133 | 1 | 25, | 0, | 127108, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server