Schema for mrnaOrientInfo
  Database: rn7    Primary Table: mrnaOrientInfo    Row Count: 266,708   Data last updated: 2021-03-24
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 6252int(10) unsigned range Start position in chromosome
chromEnd 6276int(10) unsigned range End position in chromosome
name DQ747939varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      rn7.all_mrna.qName (via mrnaOrientInfo.name)
      rn7.mgcFullMrna.qName (via mrnaOrientInfo.name)
      rn7.mgcGenes.name (via mrnaOrientInfo.name)
      rn7.refFlat.name (via mrnaOrientInfo.name)
      rn7.refGene.name (via mrnaOrientInfo.name)
      rn7.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr162526276DQ74793900000
585chr11426814298DQ61024700000
585chr11434014369DQ61675000000
585chr12325123277DQ75784601000
585chr12825828284DQ75312600000
585chr14366643696DQ61568200000
585chr14752447550DQ75784601000
585chr16193961963DQ73222600000
585chr1112199112223DQ73222600000
585chr1127108127133DQ76029400000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.