Schema for mgcFullMrna
  Database: rn7    Primary Table: mgcFullMrna    Row Count: 6,850   Data last updated: 2021-03-24
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 600smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1434int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 6int(10) unsigned range Number of inserts in target
tBaseInsert 3542int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BC079076varchar(255) values Query sequence name
qSize 1459int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1434int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 260522016int(10) unsigned range Target sequence size
tStart 1979434int(10) unsigned range Alignment start position in target
tEnd 1984410int(10) unsigned range Alignment end position in target
blockCount 7int(10) unsigned range Number of blocks in alignment
blockSizes 345,142,144,264,261,134,144,longblob   Size of each block
qStarts 25,370,512,656,920,1181,1315,longblob   Start of each block in query.
tStarts 1979434,1980438,1981167,198...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mgcFullMrna.qName)
      hgFixed.gbSeq.acc (via mgcFullMrna.qName)
      hgFixed.imageClone.acc (via mgcFullMrna.qName)
      rn7.all_mrna.qName (via mgcFullMrna.qName)
      rn7.mgcGenes.name (via mgcFullMrna.qName)
      rn7.mrnaOrientInfo.name (via mgcFullMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
60014340000063542-BC079076145901434chr1260522016197943419844107345,142,144,264,261,134,144,25,370,512,656,920,1181,1315,1979434,1980438,1981167,1981877,1982403,1983840,1984266,
601240100000729931-BC088417242702401chr12605220162111762214409481574,217,86,121,105,32,105,161,26,1600,1817,1903,2024,2129,2161,2266,2111762,2117620,2119451,2120124,2123192,2126259,2127684,2143933,
60112850010078538+BC158756131201286chr1260522016214805721578818165,123,78,181,136,152,123,328,0,165,288,366,547,683,835,958,2148057,2148528,2149611,2150495,2152683,2154124,2155371,2157553,
751833000001039797+BC097929188801833chr12605220162202500224413011183,175,158,181,122,106,159,127,135,127,360,0,183,358,516,697,819,925,1084,1211,1346,1473,2202500,2217783,2220109,2222740,2228420,2231152,2232387,2240636,2241673,2242181,2243770,
603459100000644688-BC085788461704591chr12605220162375477242475671492,1165,161,1501,188,40,44,26,1518,2683,2844,4345,4533,4573,2375477,2380136,2381504,2388547,2393290,2424627,2424712,
628320710100212673+BC083823323503209chr1260522016565557456714563155,2041,1013,0,155,2196,5655574,5662915,5670443,
64016190000023-BC099159164201619chr1260522016729342672950483310,1129,180,23,333,1462,7293426,7293737,7294868,
6421716000001011010-BC079397174301716chr12605220167565672757839811396,201,53,140,128,247,139,88,171,132,21,27,423,624,677,817,945,1192,1331,1419,1590,1722,7565672,7566261,7566791,7567128,7568053,7569035,7569614,7572034,7576152,7577504,7578377,
645160200000613190+BC078933163001602chr1260522016788598579007777289,188,340,211,191,109,274,0,289,477,817,1028,1219,1328,7885985,7888001,7891747,7892907,7893462,7899122,7900503,
6451416100001139906-BC062046143101417chr12605220167913122795444512202,97,123,71,166,55,67,125,44,82,132,253,14,216,313,436,507,673,728,795,920,964,1046,1178,7913122,7916056,7925776,7926911,7934631,7935708,7935862,7936161,7937676,7943032,7947734,7954192,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.