Manage Custom Tracks
 
Genome: Mouse    Assembly: Dec. 2011 (GRCm38/mm10)    [mm10]
Name Description Type Doc Items Pos Error
R140-L-Hipp-RNAseq-bulkR140-L-Hipp-RNAseq-bulkbigWig     Show
R140-R-Hipp-RNAseq-bulkR140-R-Hipp-RNAseq-bulkbigWig     Show
WT-Hipp-RNAseq-bulkWT-Hipp-RNAseq-bulkbigWig     Show
significant_peaks_WTvsR140significant_peaks_WTvsR140bed 6347chr1: 
significant_peaks_R140vsWTsignificant_peaks_R140vsWTbed 693chr1: 
3R140_H3K27ac_Hipp3R140_H3K27ac_HippencodePeak      
3WT_H3K27ac_narrowPeak3WT_H3K27ac_narrowPeakencodePeak      
H3K27ac_0827_WT_Hipp.R1.fastq.H3K27ac_0827_WT_Hipp.R1.fastq.bigWig     Show
H3K27ac_0827_WT_Hipp.R1.fastq.rpkm.H3K27ac_0827_WT_Hipp.R1.fastq.rpkm.bigWig     Show
H3K27ac_3R140_Hipp_c20201006.fastq.H3K27ac_3R140_Hipp_c20201006.fastq.bigWig     Show
H3K27ac_3R140_Hipp_c20201006.fastq.rpkm.H3K27ac_3R140_Hipp_c20201006.fastq.rpkm.bigWig     Show
input_0827_WT_Hipp.R1.fastq.input_0827_WT_Hipp.R1.fastq.bigWig     Show
input_3R140_Hipp_c20201006.fastq.input_3R140_Hipp_c20201006.fastq.bigWig     Show
check all / clear all 

Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.