Manage Custom Tracks
 
Genome: Mouse    Assembly: Dec. 2011 (GRCm38/mm10)    [mm10]
Name Description Type Doc Items Pos
CRE_loopsCRE_interactinteract 197299chr12:
cCREcCREbed 197299chr11:
XXbigWig    
PTZPTZbigWig    
PericytesPericytesbigWig    
PCxPCxbigWig    
PC5PC5bigWig    
PC4PC4bigWig    
PC3lPC3lbigWig    
PC3PC3bigWig    
PC1PC1bigWig    
PC.En1PC.En1bigWig    
NPCeNPCebigWig    
NPCaNPCabigWig    
NPCNPCbigWig    
MicrogliaMicrogliabigWig    
Mes.Isl1Mes.Isl1bigWig    
MesMesbigWig    
mCNmCNbigWig    
lCN.likelCN.likebigWig    
lCNlCNbigWig    
Isth.Lhx9Isth.Lhx9bigWig    
IneInebigWig    
ININbigWig    
GCPGCPbigWig    
GCGCbigWig    
GABA.ProGABA.ProbigWig    
GABA.PreGABA.PrebigWig    
EndotheliumEndotheliumbigWig    
CN.gabaCN.gababigWig    
C4.Tlx3C4.Tlx3bigWig    
C4.OtpC4.OtpbigWig    
check all / clear all 

Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.