Manage Custom Tracks
 
Genome: Human    Assembly: Feb. 2009 (GRCh37/hg19)    [hg19]
Name Description Type Doc Items Pos Error
snATAC: Endo lymphosnATAC: Endo lymphobigWig      
snATAC: B lymphocytessnATAC: B lymphocytesbigWig      
snATAC: Connecting tubule cellssnATAC: Connecting tubule cellsbigWig      
snATAC: Distal convoluted tubulesnATAC: Distal convoluted tubulebigWig      
snATAC: Endo GCsnATAC: Endo GCbigWig      
snATAC: Endo peritubularsnATAC: Endo peritubularbigWig      
snATAC: FibroblastssnATAC: FibroblastsbigWig      
snATAC: Type alpha intercalated cellssnATAC: Type alpha intercalated cellsbigWig      
snATAC: Type beta intercalated cellssnATAC: Type beta intercalated cellsbigWig      
snATAC: Injured proximal tubulesnATAC: Injured proximal tubulebigWig      
snATAC: Loop of HenlesnATAC: Loop of HenlebigWig      
snATAC: MacrophagesnATAC: MacrophagebigWig      
snATAC: Macula densasnATAC: Macula densabigWig      
snATAC: Stroma/VSMCsnATAC: Stroma/VSMCbigWig      
snATAC: Principal cellssnATAC: Principal cellsbigWig      
snATAC: Parietal epithelial cellssnATAC: Parietal epithelial cellsbigWig      
snATAC: PodocytesnATAC: PodocytebigWig      
snATAC: Proximal tubulesnATAC: Proximal tubulebigWig      
snATAC: T lymphocytessnATAC: T lymphocytesbigWig      
eGFR GWAS (N=2.27M)eGFR GWAS (N=2.27M)bed 99595chr1:   
Adult Kidney HMMAdult Kidney HMMbed 460363chr1:   
snASA SNPssnASA SNPsbed 702chr1:   
bASA SNPsbASA SNPsbed 21948chr1:   
Fine-mapping Credible SetFine-mapping Credible Setbed 8715chr1:   
eGFRcys GWASeGFRcys GWASbed 74748chr1:   
BUN GWASBUN GWASbed 42130chr1:   
ATAC Peak SNPATAC Peak SNPbed 18866chr1:   
HMM Pro&EnPromoter or enhancer by HMMbed 11032chr1:   
Target by PS10Target by PS10interact 48052chr5:   
Target by ABCAn interact fileinteract 48017chr5:   
Target by cS2GAn interact fileinteract 35104chr5:   
Target by Glom ASE colocAn interact fileinteract 10585chr5:   
Target by Tub ASE colocAn interact fileinteract 13821chr5:   
Target by Kidney eQTL colocAn interact fileinteract 19191chr5:   
Target by Kidney meQTLAn interact fileinteract 242091chr5:   
Target by Kidney eQTLAn interact fileinteract 58568chr5:   
Target by Glom ASEAn interact fileinteract 44181chr5:   
Target by Tub ASEAn interact fileinteract 46958chr5:   
TFBS ENCODE V3TFBS ENCODE V3bed 4380444chr1:   
Super-EnhancerSuper-Enhancer (SEA)bed 2283chr1:   
Regulatory VariantsRegulatory Variants (PS10)bed 25190chr1:   
Coding VariantsCoding Variantsbed 1338chr21:   
Fetal Kidney HMMFetal Kidney HMMbed 413973chr1:   
snATAC B-LymphoB_Lympho_BAMPE.bwbigWig     Show  
snATAC Endo-GCEndo_GC_BAMPE.bwbigWig     Show  
snATAC FibroFibro_BAMPE.bwbigWig     Show  
snATAC Injured PTInjured_PT_BAMPE.bwbigWig     Show  
snATAC Macula DensaMacula_Densa_BAMPE.bwbigWig     Show  
snATAC PECPEC_BAMPE.bwbigWig     Show  
snATAC T-LymphoT_Lympho_BAMPE.bwbigWig     Show  
snATAC CNTCNT_BAMPE.bwbigWig     Show  
snATAC Endo-LymphoEndo_Lympho_BAMPE.bwbigWig     Show  
snATAC IC-AIC_A_BAMPE.bwbigWig     Show  
snATAC LOHLOH_BAMPE.bwbigWig     Show  
snATAC Stroma/VSMCMes_BAMPE.bwbigWig     Show  
snATAC PTPT_BAMPE.bwbigWig     Show  
snATAC DCTDCT_BAMPE.bwbigWig     Show  
snATAC Endo-PeritubularEndo_Peritubular_BAMPE.bwbigWig     Show  
snATAC IC-BIC_B_BAMPE.bwbigWig     Show  
snATAC MacMac_BAMPE.bwbigWig     Show  
snATAC PCPC_BAMPE.bwbigWig     Show  
snATAC PodoPodo_BAMPE.bwbigWig     Show  
Kidney Open ChromatinOpen chromatin in human kidneysbed 524324chr1:   
GWAS SNP Target Gene by Open4GeneAn interact fileinteract 13139chr12:   
eGFRcrea.GWASeGFRcrea GWAS Variantsbed 99461chr15:   
eGFRcrea.GWAS.ExoneGFRcrea GWAS Exon Variants by Liu et al.bed 3803chr1:   
eGFRcrea.ExWASeGFRcrea ExWAS by Wuttke et al.bed 33chr1:   
PheWASPheWAS of CKDbed 632chr1:   
Creatinine.ExWASCreatinine.ExWAS by Backman et al. and Barton et al.bed 62chr1:   
check all / clear all 

Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.