Manage Custom Tracks
 
genome     assembly     [hg38]

Name Description Type Doc Items Pos
REH-ATAC(1)SRX5604556.bwbigWig    
REH-RAG1SRX1898037.bwbigWig    
REH-RUNX1SRX16676131.bwbigWig    
REH-ETV6SRX11052130.bwbigWig    
REH-IKZF1SRX7280996.bwbigWig    
REH-H3K27acSRX4466282.bwbigWig    
REH-H3K4me3(2)SRX4466281.bwbigWig    
REH-H3K4me3(1)SRX1776295.bwbigWig    
REH-ATACSRX7575222.bwbigWig    
Late gRV clustersLate gamma retroviral integration clusters from Wunsche et al CSC 2018bed 1450chr1:
Early gRV clustersEarly gamma retroviral integration clusters from Wunsche et al CSC 2018bed 871chr1:
Late ISATAC peaks corresponding to late gamma retroviral integration clusters from Wunsche et al CSC 2018bed 2111chr1:
Early ISATAC peaks corresponding to early gamma retroviral integration clusters from Wunsche et al CSC 2018bed 1289chr1:
Heptad_CREsHeptad cis-regulatory elementsbed 47chr21:
SpacerSpacerbed 1chr21:
MEPMEPbed 1chr21:
GMPGMPbed 1chr21:
CMPCMPbed 1chr21:
HSCHSCbed 1chr21:
Mono_ATACMono_ATACbigWig    
Ery_ATACEry_ATACbigWig    
MPP_ATACMPP_ATACbigWig    
MEP_ATACMEP_ATACbigWig    
GMP_ATACGMP_ATACbigWig    
HSC_ATACHSC_ATACbigWig    
CMP_ATACCMP_ATACbigWig    
MEP_STAG2MEP_STAG2bigWig    
GMP_STAG2GMP_STAG2bigWig    
CMP_STAG2CMP_STAG2bigWig    
HSC_STAG2HSC_STAG2bigWig    
CMP_PU1CMP_PU1bigWig    
HSC_sig_loopsHSC_H3K27ac_HiChIPbigInteract    
CMP_sig_loopsCMP_H3K27ac_HiChIPbigInteract    
GMP_sig_loopsGMP_H3K27ac_HiChIPbigInteract    
MEP_sig_loopsMEP_H3K27ac_HiChIPbigInteract    
MEP_PU1MEP_PU1bigWig    
GMP_PU1GMP_PU1bigWig    
HSC_PU1HSC_PU1bigWig    
MEP_CTCFMEP_CTCFbigWig    
GMP_CTCFGMP_CTCFbigWig    
CMP_CTCFCMP_CTCFbigWig    
HSC_CTCFHSC_CTCFbigWig    
IgGIgGbigWig    
MEP_H3K27me3MEP_H3K27me3bigWig    
MEP_H3K27acMEP_H3K27acbigWig    
MEP_H3K4me3MEP_H3K4me3bigWig    
MEP_RNAseqMEP_RNAseqbigWig    
MEP_TAL1MEP_TAL1bigWig    
MEP_GATA2MEP_GATA2bigWig    
MEP_LMO2MEP_LMO2bigWig    
MEP_LYL1MEP_LYL1bigWig    
MEP_RUNX1MEP_RUNX1bigWig    
MEP_FLI1MEP_FLI1bigWig    
MEP_ERGMEP_ERGbigWig    
GMP_H3K27me3GMP_H3K27me3bigWig    
GMP_H3K27acGMP_H3K27acbigWig    
GMP_H3K4me3GMP_H3K4me3bigWig    
GMP_RNAseqGMP_RNAseqbigWig    
GMP_TAL1GMP_TAL1bigWig    
GMP_GATA2GMP_GATA2bigWig    
GMP_LMO2GMP_LMO2bigWig    
GMP_LYL1GMP_LYL1bigWig    
GMP_RUNX1GMP_RUNX1bigWig    
GMP_FLI1GMP_FLI1bigWig    
GMP_ERGGMP_ERGbigWig    
CMP_RNAseqCMP_RNAseqbigWig    
CMP_H3K27me3CMP_H3K27me3bigWig    
CMP_H3K27acCMP_H3K27acbigWig    
CMP_H3K4me3CMP_H3K4me3bigWig    
CMP_TAL1CMP_TAL1bigWig    
CMP_GATA2CMP_GATA2bigWig    
CMP_LMO2CMP_LMO2bigWig    
CMP_LYL1CMP_LYL1bigWig    
CMP_RUNX1CMP_RUNX1bigWig    
CMP_FLI1CMP_FLI1bigWig    
CMP_ERGCMP_ERGbigWig    
HSC_RNAseqHSC_RNAseqbigWig    
HSC_H3K27me3HSC_H3K27me3_CSTbigWig    
HSC_H3K4me3HSC_Histone_H3K4me3bigWig    
HSC_H3K27acHSC_Histone_H327ACbigWig    
HSC_TAL1HSC_TAL1bigWig    
HSC_GATA2HSC_GATA2bigWig    
HSC_LMO2HSC_LMO2bigWig    
HSC_LYL1HSC_LYL1bigWig    
HSC_RUNX1HSC_RUNX1bigWig    
HSC_ERGHSC_ERGbigWig    
HSC_FLI1HSC_FLI1bigWig    
check all / clear all 

Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.