Sessions allow users to save snapshots of the Genome Browser and its current configuration, including displayed tracks, position, and custom track data. The Public Sessions tool allows users to easily share those sessions that they deem interesting with the rest of the world's researchers. You can add your own sessions to this list by checking the appropriate box on the Session Management page.
Description: This public session offers access to a track hub containing 25,000 predicted forebrain enhancers within the hg19 human genome assembly. These enhancers were identified through a DNA-sequence-based prediction pipeline that integrates tissue-specific transcription factor occupancy patterns. Essential for regulating gene expression during brain development, these enhancers were further validated using chromatin marks, DNase hypersensitivity data, GWAS-based SNP data, and in vivo zebrafish models (https://doi.org/10.1002/1873-3468.15030).
Additionally, this session includes an extra track for a subset of 2,614 predicted forebrain enhancers, representing a portion of the full set. This subset specifically reveals the binding patterns of the HES5-FOXP2-GATA3 triad, with FOXP2 binding positioned between HES5 and GATA3, helping define the forebrain transcription factor binding syntax (https://doi.org/10.1242/bio.061751).
Together, the forebrain enhancer data presented in this public track hub provides a valuable resource for investigating the genetic regulatory mechanisms underlying brain development and related diseases. It also offers a platform for exploring the role of these predicted enhancers in mammalian and primate brain evolution. Author: abbasiam Session Name: hg19_Predicted human forebrain enhancers_hg19 Genome Assembly: hg19 Creation Date: 2025-03-20 Views: 22
Description: This session give an overview of the human CHD1 gene encoding the clinically relevant E-Cadherin/Cadherin-1 protein. Disease susceptibility is associated with variants in CDH-1 including gastric cancer and lobular breast cancer. Data tracks demonstrating disease-associated alleles, protein domains, and conservation have been included. Author: renkejhsph Session Name: hg38 CDH1 gene Genome Assembly: hg38 Creation Date: 2025-03-20 Views: 6
Description: It is tracked by samples and treatment groups. Some differentially accessible peaks highlighted.Custom gtf file with transcript ID, gene names, gene ID Author: Pengxin Yang Session Name: pig_BCG_ATAC_filtered_by_sample_and_merged_custom_gtf Genome Assembly: susScr11 Creation Date: 2025-03-03 Views: 171
Description: It is tracked by samples and treatment groups. Some differentially accessible peaks highlighted Author: Pengxin Yang Session Name: pig_BCG_ATAC_filtered_by_sample_and_merged_highlight Genome Assembly: susScr11 Creation Date: 2025-03-03 Views: 28
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