Schema for humanHprdP2P
  Database: hg19    Primary Table: humanHprdP2P    Row Count: 4,861,767   Data last updated: 2013-06-14
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query uc022ate.1varchar(255) Query gene. Indexed
target uc022ate.1varchar(255) Target gene. Not indexed
distance 1float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via humanHprdP2P.query)
      hg19.ceBlastTab.query (via humanHprdP2P.query)
      hg19.dmBlastTab.query (via humanHprdP2P.query)
      hg19.drBlastTab.query (via humanHprdP2P.query)
      hg19.foldUtr3.name (via humanHprdP2P.query)
      hg19.foldUtr5.name (via humanHprdP2P.query)
      hg19.gnfAtlas2Distance.query (via humanHprdP2P.query)
      hg19.gnfAtlas2Distance.target (via humanHprdP2P.query)
      hg19.gnfU95Distance.query (via humanHprdP2P.query)
      hg19.gnfU95Distance.target (via humanHprdP2P.query)
      hg19.humanVidalP2P.query (via humanHprdP2P.query)
      hg19.humanVidalP2P.target (via humanHprdP2P.query)
      hg19.humanWankerP2P.query (via humanHprdP2P.query)
      hg19.humanWankerP2P.target (via humanHprdP2P.query)
      hg19.keggPathway.kgID (via humanHprdP2P.query)
      hg19.kgAlias.kgID (via humanHprdP2P.query)
      hg19.kgColor.kgID (via humanHprdP2P.query)
      hg19.kgProtAlias.kgID (via humanHprdP2P.query)
      hg19.kgProtMap2.qName (via humanHprdP2P.query)
      hg19.kgSpAlias.kgID (via humanHprdP2P.query)
      hg19.kgTargetAli.qName (via humanHprdP2P.query)
      hg19.kgTxInfo.name (via humanHprdP2P.query)
      hg19.kgXref.kgID (via humanHprdP2P.query)
      hg19.knownAttrs.kgID (via humanHprdP2P.query)
      hg19.knownBlastTab.query (via humanHprdP2P.query)
      hg19.knownBlastTab.target (via humanHprdP2P.query)
      hg19.knownCanonToDecipher.name (via humanHprdP2P.query)
      hg19.knownCanonical.transcript (via humanHprdP2P.query)
      hg19.knownCds.name (via humanHprdP2P.query)
      hg19.knownGene.name (via humanHprdP2P.query)
      hg19.knownGeneMrna.name (via humanHprdP2P.query)
      hg19.knownGenePep.name (via humanHprdP2P.query)
      hg19.knownGeneTxMrna.name (via humanHprdP2P.query)
      hg19.knownGeneTxPep.name (via humanHprdP2P.query)
      hg19.knownIsoforms.transcript (via humanHprdP2P.query)
      hg19.knownToAllenBrain.name (via humanHprdP2P.query)
      hg19.knownToDecipher.name (via humanHprdP2P.query)
      hg19.knownToEnsembl.name (via humanHprdP2P.query)
      hg19.knownToGnfAtlas2.name (via humanHprdP2P.query)
      hg19.knownToHInv.name (via humanHprdP2P.query)
      hg19.knownToHprd.name (via humanHprdP2P.query)
      hg19.knownToKeggEntrez.name (via humanHprdP2P.query)
      hg19.knownToLocusLink.name (via humanHprdP2P.query)
      hg19.knownToLynx.name (via humanHprdP2P.query)
      hg19.knownToMrna.name (via humanHprdP2P.query)
      hg19.knownToMrnaSingle.name (via humanHprdP2P.query)
      hg19.knownToMupit.name (via humanHprdP2P.query)
      hg19.knownToNextProt.name (via humanHprdP2P.query)
      hg19.knownToPfam.name (via humanHprdP2P.query)
      hg19.knownToRefSeq.name (via humanHprdP2P.query)
      hg19.knownToSuper.gene (via humanHprdP2P.query)
      hg19.knownToTag.name (via humanHprdP2P.query)
      hg19.knownToTreefam.name (via humanHprdP2P.query)
      hg19.knownToU133.name (via humanHprdP2P.query)
      hg19.knownToU133Plus2.name (via humanHprdP2P.query)
      hg19.knownToU95.name (via humanHprdP2P.query)
      hg19.knownToVisiGene.name (via humanHprdP2P.query)
      hg19.knownToWikipedia.name (via humanHprdP2P.query)
      hg19.mmBlastTab.query (via humanHprdP2P.query)
      hg19.rnBlastTab.query (via humanHprdP2P.query)
      hg19.scBlastTab.query (via humanHprdP2P.query)
      hg19.ucscScop.ucscId (via humanHprdP2P.query)
      knownGeneV39.bioCycPathway.kgID (via humanHprdP2P.query)
      knownGeneV39.ceBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.dmBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.drBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.foldUtr3.name (via humanHprdP2P.query)
      knownGeneV39.foldUtr5.name (via humanHprdP2P.query)
      knownGeneV39.gnfAtlas2Distance.query (via humanHprdP2P.query)
      knownGeneV39.gnfAtlas2Distance.target (via humanHprdP2P.query)
      knownGeneV39.kgAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgColor.kgID (via humanHprdP2P.query)
      knownGeneV39.kgProtAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgSpAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgTargetAli.qName (via humanHprdP2P.query)
      knownGeneV39.kgXref.kgID (via humanHprdP2P.query)
      knownGeneV39.knownAttrs.kgID (via humanHprdP2P.query)
      knownGeneV39.knownBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.knownBlastTab.target (via humanHprdP2P.query)
      knownGeneV39.knownCanonical.protein (via humanHprdP2P.query)
      knownGeneV39.knownCanonical.transcript (via humanHprdP2P.query)
      knownGeneV39.knownCds.name (via humanHprdP2P.query)
      knownGeneV39.knownGene.name (via humanHprdP2P.query)
      knownGeneV39.knownGeneMrna.name (via humanHprdP2P.query)
      knownGeneV39.knownGenePep.name (via humanHprdP2P.query)
      knownGeneV39.knownIsoforms.transcript (via humanHprdP2P.query)
      knownGeneV39.knownToEnsembl.name (via humanHprdP2P.query)
      knownGeneV39.knownToGnfAtlas2.name (via humanHprdP2P.query)
      knownGeneV39.knownToHprd.name (via humanHprdP2P.query)
      knownGeneV39.knownToLocusLink.name (via humanHprdP2P.query)
      knownGeneV39.knownToMrna.name (via humanHprdP2P.query)
      knownGeneV39.knownToMrnaSingle.name (via humanHprdP2P.query)
      knownGeneV39.knownToMupit.name (via humanHprdP2P.query)
      knownGeneV39.knownToPfam.name (via humanHprdP2P.query)
      knownGeneV39.knownToRefSeq.name (via humanHprdP2P.query)
      knownGeneV39.knownToSuper.gene (via humanHprdP2P.query)
      knownGeneV39.knownToTag.name (via humanHprdP2P.query)
      knownGeneV39.knownToU133.name (via humanHprdP2P.query)
      knownGeneV39.knownToU95.name (via humanHprdP2P.query)
      knownGeneV39.knownToVisiGene.name (via humanHprdP2P.query)
      knownGeneV39.knownToWikipedia.name (via humanHprdP2P.query)
      knownGeneV39.mmBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.rnBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.scBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.ucscScop.ucscId (via humanHprdP2P.query)
      hg19.knownToHprd.name (via humanHprdP2P.target)
      knownGeneV39.humanHprdP2P.target (via humanHprdP2P.target)
      knownGeneV39.knownToHprd.name (via humanHprdP2P.target)

Sample Rows
 
querytargetdistance
uc022ate.1uc022ate.11
uc022ate.1uc002hsm.31
uc022ate.1uc002hsp.31
uc022ate.1uc002hso.31
uc022ate.1uc003vif.22
uc022ate.1uc003yvt.31
uc022ate.1uc011cqk.22
uc022ate.1uc003jqq.32
uc022ate.1uc001ffy.31
uc022ate.1uc001ffv.31

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.