Schema for kgProtMap2
  Database: hg19    Primary Table: kgProtMap2    Row Count: 63,636   Data last updated: 2013-06-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 402int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 1048int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName uc010nxq.1varchar(255) values Query sequence name
qSize 402int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 402int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 249250621int(10) unsigned range Target sequence size
tStart 12189int(10) unsigned range Alignment start position in target
tEnd 13639int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 38,127,237,longblob   Size of each block
qStarts 0,38,165,longblob   Start of each block in query.
tStarts 12189,12594,13402,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via kgProtMap2.qName)
      hg19.ceBlastTab.query (via kgProtMap2.qName)
      hg19.dmBlastTab.query (via kgProtMap2.qName)
      hg19.drBlastTab.query (via kgProtMap2.qName)
      hg19.foldUtr3.name (via kgProtMap2.qName)
      hg19.foldUtr5.name (via kgProtMap2.qName)
      hg19.gnfAtlas2Distance.query (via kgProtMap2.qName)
      hg19.gnfAtlas2Distance.target (via kgProtMap2.qName)
      hg19.gnfU95Distance.query (via kgProtMap2.qName)
      hg19.gnfU95Distance.target (via kgProtMap2.qName)
      hg19.humanHprdP2P.query (via kgProtMap2.qName)
      hg19.humanHprdP2P.target (via kgProtMap2.qName)
      hg19.humanVidalP2P.query (via kgProtMap2.qName)
      hg19.humanVidalP2P.target (via kgProtMap2.qName)
      hg19.humanWankerP2P.query (via kgProtMap2.qName)
      hg19.humanWankerP2P.target (via kgProtMap2.qName)
      hg19.keggPathway.kgID (via kgProtMap2.qName)
      hg19.kgAlias.kgID (via kgProtMap2.qName)
      hg19.kgColor.kgID (via kgProtMap2.qName)
      hg19.kgProtAlias.kgID (via kgProtMap2.qName)
      hg19.kgSpAlias.kgID (via kgProtMap2.qName)
      hg19.kgTargetAli.qName (via kgProtMap2.qName)
      hg19.kgTxInfo.name (via kgProtMap2.qName)
      hg19.kgXref.kgID (via kgProtMap2.qName)
      hg19.knownAttrs.kgID (via kgProtMap2.qName)
      hg19.knownBlastTab.query (via kgProtMap2.qName)
      hg19.knownBlastTab.target (via kgProtMap2.qName)
      hg19.knownCanonToDecipher.name (via kgProtMap2.qName)
      hg19.knownCanonical.transcript (via kgProtMap2.qName)
      hg19.knownCds.name (via kgProtMap2.qName)
      hg19.knownGene.name (via kgProtMap2.qName)
      hg19.knownGeneMrna.name (via kgProtMap2.qName)
      hg19.knownGenePep.name (via kgProtMap2.qName)
      hg19.knownGeneTxMrna.name (via kgProtMap2.qName)
      hg19.knownGeneTxPep.name (via kgProtMap2.qName)
      hg19.knownIsoforms.transcript (via kgProtMap2.qName)
      hg19.knownToAllenBrain.name (via kgProtMap2.qName)
      hg19.knownToDecipher.name (via kgProtMap2.qName)
      hg19.knownToEnsembl.name (via kgProtMap2.qName)
      hg19.knownToGnfAtlas2.name (via kgProtMap2.qName)
      hg19.knownToHInv.name (via kgProtMap2.qName)
      hg19.knownToHprd.name (via kgProtMap2.qName)
      hg19.knownToKeggEntrez.name (via kgProtMap2.qName)
      hg19.knownToLocusLink.name (via kgProtMap2.qName)
      hg19.knownToLynx.name (via kgProtMap2.qName)
      hg19.knownToMrna.name (via kgProtMap2.qName)
      hg19.knownToMrnaSingle.name (via kgProtMap2.qName)
      hg19.knownToMupit.name (via kgProtMap2.qName)
      hg19.knownToNextProt.name (via kgProtMap2.qName)
      hg19.knownToPfam.name (via kgProtMap2.qName)
      hg19.knownToRefSeq.name (via kgProtMap2.qName)
      hg19.knownToSuper.gene (via kgProtMap2.qName)
      hg19.knownToTag.name (via kgProtMap2.qName)
      hg19.knownToTreefam.name (via kgProtMap2.qName)
      hg19.knownToU133.name (via kgProtMap2.qName)
      hg19.knownToU133Plus2.name (via kgProtMap2.qName)
      hg19.knownToU95.name (via kgProtMap2.qName)
      hg19.knownToVisiGene.name (via kgProtMap2.qName)
      hg19.knownToWikipedia.name (via kgProtMap2.qName)
      hg19.mmBlastTab.query (via kgProtMap2.qName)
      hg19.rnBlastTab.query (via kgProtMap2.qName)
      hg19.scBlastTab.query (via kgProtMap2.qName)
      hg19.ucscScop.ucscId (via kgProtMap2.qName)
      knownGeneV39.bioCycPathway.kgID (via kgProtMap2.qName)
      knownGeneV39.ceBlastTab.query (via kgProtMap2.qName)
      knownGeneV39.dmBlastTab.query (via kgProtMap2.qName)
      knownGeneV39.drBlastTab.query (via kgProtMap2.qName)
      knownGeneV39.foldUtr3.name (via kgProtMap2.qName)
      knownGeneV39.foldUtr5.name (via kgProtMap2.qName)
      knownGeneV39.gnfAtlas2Distance.query (via kgProtMap2.qName)
      knownGeneV39.gnfAtlas2Distance.target (via kgProtMap2.qName)
      knownGeneV39.kgAlias.kgID (via kgProtMap2.qName)
      knownGeneV39.kgColor.kgID (via kgProtMap2.qName)
      knownGeneV39.kgProtAlias.kgID (via kgProtMap2.qName)
      knownGeneV39.kgSpAlias.kgID (via kgProtMap2.qName)
      knownGeneV39.kgTargetAli.qName (via kgProtMap2.qName)
      knownGeneV39.kgXref.kgID (via kgProtMap2.qName)
      knownGeneV39.knownAttrs.kgID (via kgProtMap2.qName)
      knownGeneV39.knownBlastTab.query (via kgProtMap2.qName)
      knownGeneV39.knownBlastTab.target (via kgProtMap2.qName)
      knownGeneV39.knownCanonical.protein (via kgProtMap2.qName)
      knownGeneV39.knownCanonical.transcript (via kgProtMap2.qName)
      knownGeneV39.knownCds.name (via kgProtMap2.qName)
      knownGeneV39.knownGene.name (via kgProtMap2.qName)
      knownGeneV39.knownGeneMrna.name (via kgProtMap2.qName)
      knownGeneV39.knownGenePep.name (via kgProtMap2.qName)
      knownGeneV39.knownIsoforms.transcript (via kgProtMap2.qName)
      knownGeneV39.knownToEnsembl.name (via kgProtMap2.qName)
      knownGeneV39.knownToGnfAtlas2.name (via kgProtMap2.qName)
      knownGeneV39.knownToHprd.name (via kgProtMap2.qName)
      knownGeneV39.knownToLocusLink.name (via kgProtMap2.qName)
      knownGeneV39.knownToMrna.name (via kgProtMap2.qName)
      knownGeneV39.knownToMrnaSingle.name (via kgProtMap2.qName)
      knownGeneV39.knownToMupit.name (via kgProtMap2.qName)
      knownGeneV39.knownToPfam.name (via kgProtMap2.qName)
      knownGeneV39.knownToRefSeq.name (via kgProtMap2.qName)
      knownGeneV39.knownToSuper.gene (via kgProtMap2.qName)
      knownGeneV39.knownToTag.name (via kgProtMap2.qName)
      knownGeneV39.knownToU133.name (via kgProtMap2.qName)
      knownGeneV39.knownToU95.name (via kgProtMap2.qName)
      knownGeneV39.knownToVisiGene.name (via kgProtMap2.qName)
      knownGeneV39.knownToWikipedia.name (via kgProtMap2.qName)
      knownGeneV39.mmBlastTab.query (via kgProtMap2.qName)
      knownGeneV39.rnBlastTab.query (via kgProtMap2.qName)
      knownGeneV39.scBlastTab.query (via kgProtMap2.qName)
      knownGeneV39.ucscScop.ucscId (via kgProtMap2.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5854020000021048+uc010nxq.14020402chr12492506211218913639338,127,237,0,38,165,12189,12594,13402,
5859150000000+uc001aal.19150915chr124925062169090700051915,0,69090,
586117000000193-uc021oeg.2117001170chr124925062113852913979221167,3,0,1167,138529,139789,
587117000000193+uc001aau.3117001170chr124925062132434232560523,1167,0,3,324342,324438,
587117000000193+uc009vjk.2117001170chr124925062132434232560523,1167,0,3,324342,324438,
587801000002290+uc021oeh.18010801chr12492506213245143256053172,406,223,0,172,578,324514,324718,325382,
5874680000000+uc021oei.14680468chr12492506213277453282131468,0,327745,
5879360000000+uc010nxu.29360936chr12492506213676583685941936,0,367658,
5899360000000-uc010nxv.29360936chr12492506216210986220341936,0,621098,
5906240000000-uc001abe.46240624chr12492506216644846651081624,0,664484,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.