Schema for ceBlastTab
  Database: hg18    Primary Table: ceBlastTab    Row Count: 4,941   Data last updated: 2009-03-03
Format description: Blast alignments of C. elegans genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query uc010fpt.1varchar(255) values Name of sequence in this assembly (query)
target B0024.15varchar(255) values Name of sequence in other assembly (target)
identity 27.9float range Percent identity
aliLength 233int(10) unsigned range Length of alignment
mismatch 161int(10) unsigned range Number of mismatches
gapOpen 5int(10) unsigned range Number of gap openings
qStart 38int(10) unsigned range Start in query (0 based)
qEnd 267int(10) unsigned range End in query (non-inclusive)
tStart 47int(10) unsigned range Start in target (0 based)
tEnd 277int(10) unsigned range End in target (non-inclusive)
eValue 1.0000000000000001e-24double range Expectation value
bitScore 110double range Bit score

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via ceBlastTab.query)
      hg18.ccdsKgMap.geneId (via ceBlastTab.query)
      hg18.dmBlastTab.query (via ceBlastTab.query)
      hg18.drBlastTab.query (via ceBlastTab.query)
      hg18.foldUtr3.name (via ceBlastTab.query)
      hg18.foldUtr5.name (via ceBlastTab.query)
      hg18.gnfAtlas2Distance.query (via ceBlastTab.query)
      hg18.gnfAtlas2Distance.target (via ceBlastTab.query)
      hg18.gnfU95Distance.query (via ceBlastTab.query)
      hg18.gnfU95Distance.target (via ceBlastTab.query)
      hg18.humanHprdP2P.query (via ceBlastTab.query)
      hg18.humanHprdP2P.target (via ceBlastTab.query)
      hg18.humanVidalP2P.query (via ceBlastTab.query)
      hg18.humanVidalP2P.target (via ceBlastTab.query)
      hg18.humanWankerP2P.query (via ceBlastTab.query)
      hg18.humanWankerP2P.target (via ceBlastTab.query)
      hg18.keggPathway.kgID (via ceBlastTab.query)
      hg18.kgAlias.kgID (via ceBlastTab.query)
      hg18.kgColor.kgID (via ceBlastTab.query)
      hg18.kgProtAlias.kgID (via ceBlastTab.query)
      hg18.kgProtMap2.qName (via ceBlastTab.query)
      hg18.kgSpAlias.kgID (via ceBlastTab.query)
      hg18.kgTargetAli.qName (via ceBlastTab.query)
      hg18.kgTxInfo.name (via ceBlastTab.query)
      hg18.kgXref.kgID (via ceBlastTab.query)
      hg18.knownBlastTab.query (via ceBlastTab.query)
      hg18.knownBlastTab.target (via ceBlastTab.query)
      hg18.knownCanonToDecipher.name (via ceBlastTab.query)
      hg18.knownCanonical.protein (via ceBlastTab.query)
      hg18.knownCanonical.transcript (via ceBlastTab.query)
      hg18.knownGene.name (via ceBlastTab.query)
      hg18.knownGeneMrna.name (via ceBlastTab.query)
      hg18.knownGenePep.name (via ceBlastTab.query)
      hg18.knownIsoforms.transcript (via ceBlastTab.query)
      hg18.knownToAllenBrain.name (via ceBlastTab.query)
      hg18.knownToDecipher.name (via ceBlastTab.query)
      hg18.knownToEnsembl.name (via ceBlastTab.query)
      hg18.knownToGnf1h.name (via ceBlastTab.query)
      hg18.knownToGnfAtlas2.name (via ceBlastTab.query)
      hg18.knownToHInv.name (via ceBlastTab.query)
      hg18.knownToHprd.name (via ceBlastTab.query)
      hg18.knownToKeggEntrez.name (via ceBlastTab.query)
      hg18.knownToLocusLink.name (via ceBlastTab.query)
      hg18.knownToMupit.name (via ceBlastTab.query)
      hg18.knownToPfam.name (via ceBlastTab.query)
      hg18.knownToRefSeq.name (via ceBlastTab.query)
      hg18.knownToSuper.gene (via ceBlastTab.query)
      hg18.knownToTreefam.name (via ceBlastTab.query)
      hg18.knownToU133.name (via ceBlastTab.query)
      hg18.knownToU133Plus2.name (via ceBlastTab.query)
      hg18.knownToU95.name (via ceBlastTab.query)
      hg18.knownToVisiGene.name (via ceBlastTab.query)
      hg18.mmBlastTab.query (via ceBlastTab.query)
      hg18.rnBlastTab.query (via ceBlastTab.query)
      hg18.scBlastTab.query (via ceBlastTab.query)
      hg18.ucscScop.ucscId (via ceBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via ceBlastTab.query)
      knownGeneV39.ceBlastTab.query (via ceBlastTab.query)
      knownGeneV39.dmBlastTab.query (via ceBlastTab.query)
      knownGeneV39.drBlastTab.query (via ceBlastTab.query)
      knownGeneV39.foldUtr3.name (via ceBlastTab.query)
      knownGeneV39.foldUtr5.name (via ceBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via ceBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via ceBlastTab.query)
      knownGeneV39.kgAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgColor.kgID (via ceBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via ceBlastTab.query)
      knownGeneV39.kgXref.kgID (via ceBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via ceBlastTab.query)
      knownGeneV39.knownBlastTab.query (via ceBlastTab.query)
      knownGeneV39.knownBlastTab.target (via ceBlastTab.query)
      knownGeneV39.knownCanonical.protein (via ceBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via ceBlastTab.query)
      knownGeneV39.knownCds.name (via ceBlastTab.query)
      knownGeneV39.knownGene.name (via ceBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via ceBlastTab.query)
      knownGeneV39.knownGenePep.name (via ceBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via ceBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via ceBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via ceBlastTab.query)
      knownGeneV39.knownToHprd.name (via ceBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via ceBlastTab.query)
      knownGeneV39.knownToMrna.name (via ceBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via ceBlastTab.query)
      knownGeneV39.knownToMupit.name (via ceBlastTab.query)
      knownGeneV39.knownToPfam.name (via ceBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via ceBlastTab.query)
      knownGeneV39.knownToSuper.gene (via ceBlastTab.query)
      knownGeneV39.knownToTag.name (via ceBlastTab.query)
      knownGeneV39.knownToU133.name (via ceBlastTab.query)
      knownGeneV39.knownToU95.name (via ceBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via ceBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via ceBlastTab.query)
      knownGeneV39.mmBlastTab.query (via ceBlastTab.query)
      knownGeneV39.rnBlastTab.query (via ceBlastTab.query)
      knownGeneV39.scBlastTab.query (via ceBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via ceBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc010fpt.1B0024.1527.9233161538267472771.0000000000000001e-24110
uc003trd.1C05D11.1030.7114703110741170.0000000652.4
uc003uid.1ZC506.4b40.488674431630834338901e-177620
uc010fpr.1Y57G11A.325224130722236522480.0000000000367.4
uc010gfz.1Y73E7A.650.72693310680698e-1678.2
uc003tqk.1ZK1067.129.56613572429636386441e-80298
uc010ggp.1F47G4.656.2548210208256531010.00000000758.5
uc010fox.1R10E4.2a60.3417966258235772532e-47185
uc003tqg.1F32D8.686.5767900670676e-1885.1
uc003szf.1B0250.554.5829513224233542996e-86313

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.