Schema for humanHprdP2P
  Database: hg18    Primary Table: humanHprdP2P    Row Count: 3,093,463   Data last updated: 2009-03-04
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query uc003sou.1varchar(255) Query gene. Indexed
target uc003sou.1varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via humanHprdP2P.query)
      hg18.ccdsKgMap.geneId (via humanHprdP2P.query)
      hg18.ceBlastTab.query (via humanHprdP2P.query)
      hg18.dmBlastTab.query (via humanHprdP2P.query)
      hg18.drBlastTab.query (via humanHprdP2P.query)
      hg18.foldUtr3.name (via humanHprdP2P.query)
      hg18.foldUtr5.name (via humanHprdP2P.query)
      hg18.gnfAtlas2Distance.query (via humanHprdP2P.query)
      hg18.gnfAtlas2Distance.target (via humanHprdP2P.query)
      hg18.gnfU95Distance.query (via humanHprdP2P.query)
      hg18.gnfU95Distance.target (via humanHprdP2P.query)
      hg18.humanVidalP2P.query (via humanHprdP2P.query)
      hg18.humanVidalP2P.target (via humanHprdP2P.query)
      hg18.humanWankerP2P.query (via humanHprdP2P.query)
      hg18.humanWankerP2P.target (via humanHprdP2P.query)
      hg18.keggPathway.kgID (via humanHprdP2P.query)
      hg18.kgAlias.kgID (via humanHprdP2P.query)
      hg18.kgColor.kgID (via humanHprdP2P.query)
      hg18.kgProtAlias.kgID (via humanHprdP2P.query)
      hg18.kgProtMap2.qName (via humanHprdP2P.query)
      hg18.kgSpAlias.kgID (via humanHprdP2P.query)
      hg18.kgTargetAli.qName (via humanHprdP2P.query)
      hg18.kgTxInfo.name (via humanHprdP2P.query)
      hg18.kgXref.kgID (via humanHprdP2P.query)
      hg18.knownBlastTab.query (via humanHprdP2P.query)
      hg18.knownBlastTab.target (via humanHprdP2P.query)
      hg18.knownCanonToDecipher.name (via humanHprdP2P.query)
      hg18.knownCanonical.protein (via humanHprdP2P.query)
      hg18.knownCanonical.transcript (via humanHprdP2P.query)
      hg18.knownGene.name (via humanHprdP2P.query)
      hg18.knownGeneMrna.name (via humanHprdP2P.query)
      hg18.knownGenePep.name (via humanHprdP2P.query)
      hg18.knownIsoforms.transcript (via humanHprdP2P.query)
      hg18.knownToAllenBrain.name (via humanHprdP2P.query)
      hg18.knownToDecipher.name (via humanHprdP2P.query)
      hg18.knownToEnsembl.name (via humanHprdP2P.query)
      hg18.knownToGnf1h.name (via humanHprdP2P.query)
      hg18.knownToGnfAtlas2.name (via humanHprdP2P.query)
      hg18.knownToHInv.name (via humanHprdP2P.query)
      hg18.knownToHprd.name (via humanHprdP2P.query)
      hg18.knownToKeggEntrez.name (via humanHprdP2P.query)
      hg18.knownToLocusLink.name (via humanHprdP2P.query)
      hg18.knownToMupit.name (via humanHprdP2P.query)
      hg18.knownToPfam.name (via humanHprdP2P.query)
      hg18.knownToRefSeq.name (via humanHprdP2P.query)
      hg18.knownToSuper.gene (via humanHprdP2P.query)
      hg18.knownToTreefam.name (via humanHprdP2P.query)
      hg18.knownToU133.name (via humanHprdP2P.query)
      hg18.knownToU133Plus2.name (via humanHprdP2P.query)
      hg18.knownToU95.name (via humanHprdP2P.query)
      hg18.knownToVisiGene.name (via humanHprdP2P.query)
      hg18.mmBlastTab.query (via humanHprdP2P.query)
      hg18.rnBlastTab.query (via humanHprdP2P.query)
      hg18.scBlastTab.query (via humanHprdP2P.query)
      hg18.ucscScop.ucscId (via humanHprdP2P.query)
      knownGeneV39.bioCycPathway.kgID (via humanHprdP2P.query)
      knownGeneV39.ceBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.dmBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.drBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.foldUtr3.name (via humanHprdP2P.query)
      knownGeneV39.foldUtr5.name (via humanHprdP2P.query)
      knownGeneV39.gnfAtlas2Distance.query (via humanHprdP2P.query)
      knownGeneV39.gnfAtlas2Distance.target (via humanHprdP2P.query)
      knownGeneV39.kgAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgColor.kgID (via humanHprdP2P.query)
      knownGeneV39.kgProtAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgSpAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgTargetAli.qName (via humanHprdP2P.query)
      knownGeneV39.kgXref.kgID (via humanHprdP2P.query)
      knownGeneV39.knownAttrs.kgID (via humanHprdP2P.query)
      knownGeneV39.knownBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.knownBlastTab.target (via humanHprdP2P.query)
      knownGeneV39.knownCanonical.protein (via humanHprdP2P.query)
      knownGeneV39.knownCanonical.transcript (via humanHprdP2P.query)
      knownGeneV39.knownCds.name (via humanHprdP2P.query)
      knownGeneV39.knownGene.name (via humanHprdP2P.query)
      knownGeneV39.knownGeneMrna.name (via humanHprdP2P.query)
      knownGeneV39.knownGenePep.name (via humanHprdP2P.query)
      knownGeneV39.knownIsoforms.transcript (via humanHprdP2P.query)
      knownGeneV39.knownToEnsembl.name (via humanHprdP2P.query)
      knownGeneV39.knownToGnfAtlas2.name (via humanHprdP2P.query)
      knownGeneV39.knownToHprd.name (via humanHprdP2P.query)
      knownGeneV39.knownToLocusLink.name (via humanHprdP2P.query)
      knownGeneV39.knownToMrna.name (via humanHprdP2P.query)
      knownGeneV39.knownToMrnaSingle.name (via humanHprdP2P.query)
      knownGeneV39.knownToMupit.name (via humanHprdP2P.query)
      knownGeneV39.knownToPfam.name (via humanHprdP2P.query)
      knownGeneV39.knownToRefSeq.name (via humanHprdP2P.query)
      knownGeneV39.knownToSuper.gene (via humanHprdP2P.query)
      knownGeneV39.knownToTag.name (via humanHprdP2P.query)
      knownGeneV39.knownToU133.name (via humanHprdP2P.query)
      knownGeneV39.knownToU95.name (via humanHprdP2P.query)
      knownGeneV39.knownToVisiGene.name (via humanHprdP2P.query)
      knownGeneV39.knownToWikipedia.name (via humanHprdP2P.query)
      knownGeneV39.mmBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.rnBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.scBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.ucscScop.ucscId (via humanHprdP2P.query)
      hg18.knownToHprd.name (via humanHprdP2P.target)
      knownGeneV39.humanHprdP2P.target (via humanHprdP2P.target)
      knownGeneV39.knownToHprd.name (via humanHprdP2P.target)

Sample Rows
 
querytargetdistance
uc003sou.1uc003sou.10
uc003sou.1uc003ckp.21
uc003sou.1uc003ckq.21
uc003sou.1uc010hia.11
uc003sou.1uc003ckr.21
uc003sou.1uc003yhv.12
uc003sou.1uc002gim.22
uc003sou.1uc002gij.22
uc003sou.1uc003iwi.12
uc003sou.1uc003iwh.12

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.