Schema for scBlastTab
  Database: hg18    Primary Table: scBlastTab    Row Count: 25,312   Data last updated: 2009-03-03
Format description: Blast alignments of S. cerevisiae genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query uc001aby.2varchar(255) values Name of sequence in this assembly (query)
target YOR206Wvarchar(255) values Name of sequence in other assembly (target)
identity 32.58float range Percent identity
aliLength 445int(10) unsigned range Length of alignment
mismatch 265int(10) unsigned range Number of mismatches
gapOpen 8int(10) unsigned range Number of gap openings
qStart 46int(10) unsigned range Start in query (0 based)
qEnd 474int(10) unsigned range End in query (non-inclusive)
tStart 273int(10) unsigned range Start in target (0 based)
tEnd 700int(10) unsigned range End in target (non-inclusive)
eValue 2e-62double range Expectation value
bitScore 234double range Bit score

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via scBlastTab.query)
      hg18.ccdsKgMap.geneId (via scBlastTab.query)
      hg18.ceBlastTab.query (via scBlastTab.query)
      hg18.dmBlastTab.query (via scBlastTab.query)
      hg18.drBlastTab.query (via scBlastTab.query)
      hg18.foldUtr3.name (via scBlastTab.query)
      hg18.foldUtr5.name (via scBlastTab.query)
      hg18.gnfAtlas2Distance.query (via scBlastTab.query)
      hg18.gnfAtlas2Distance.target (via scBlastTab.query)
      hg18.gnfU95Distance.query (via scBlastTab.query)
      hg18.gnfU95Distance.target (via scBlastTab.query)
      hg18.humanHprdP2P.query (via scBlastTab.query)
      hg18.humanHprdP2P.target (via scBlastTab.query)
      hg18.humanVidalP2P.query (via scBlastTab.query)
      hg18.humanVidalP2P.target (via scBlastTab.query)
      hg18.humanWankerP2P.query (via scBlastTab.query)
      hg18.humanWankerP2P.target (via scBlastTab.query)
      hg18.keggPathway.kgID (via scBlastTab.query)
      hg18.kgAlias.kgID (via scBlastTab.query)
      hg18.kgColor.kgID (via scBlastTab.query)
      hg18.kgProtAlias.kgID (via scBlastTab.query)
      hg18.kgProtMap2.qName (via scBlastTab.query)
      hg18.kgSpAlias.kgID (via scBlastTab.query)
      hg18.kgTargetAli.qName (via scBlastTab.query)
      hg18.kgTxInfo.name (via scBlastTab.query)
      hg18.kgXref.kgID (via scBlastTab.query)
      hg18.knownBlastTab.query (via scBlastTab.query)
      hg18.knownBlastTab.target (via scBlastTab.query)
      hg18.knownCanonToDecipher.name (via scBlastTab.query)
      hg18.knownCanonical.protein (via scBlastTab.query)
      hg18.knownCanonical.transcript (via scBlastTab.query)
      hg18.knownGene.name (via scBlastTab.query)
      hg18.knownGeneMrna.name (via scBlastTab.query)
      hg18.knownGenePep.name (via scBlastTab.query)
      hg18.knownIsoforms.transcript (via scBlastTab.query)
      hg18.knownToAllenBrain.name (via scBlastTab.query)
      hg18.knownToDecipher.name (via scBlastTab.query)
      hg18.knownToEnsembl.name (via scBlastTab.query)
      hg18.knownToGnf1h.name (via scBlastTab.query)
      hg18.knownToGnfAtlas2.name (via scBlastTab.query)
      hg18.knownToHInv.name (via scBlastTab.query)
      hg18.knownToHprd.name (via scBlastTab.query)
      hg18.knownToKeggEntrez.name (via scBlastTab.query)
      hg18.knownToLocusLink.name (via scBlastTab.query)
      hg18.knownToMupit.name (via scBlastTab.query)
      hg18.knownToPfam.name (via scBlastTab.query)
      hg18.knownToRefSeq.name (via scBlastTab.query)
      hg18.knownToSuper.gene (via scBlastTab.query)
      hg18.knownToTreefam.name (via scBlastTab.query)
      hg18.knownToU133.name (via scBlastTab.query)
      hg18.knownToU133Plus2.name (via scBlastTab.query)
      hg18.knownToU95.name (via scBlastTab.query)
      hg18.knownToVisiGene.name (via scBlastTab.query)
      hg18.mmBlastTab.query (via scBlastTab.query)
      hg18.rnBlastTab.query (via scBlastTab.query)
      hg18.ucscScop.ucscId (via scBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via scBlastTab.query)
      knownGeneV39.ceBlastTab.query (via scBlastTab.query)
      knownGeneV39.dmBlastTab.query (via scBlastTab.query)
      knownGeneV39.drBlastTab.query (via scBlastTab.query)
      knownGeneV39.foldUtr3.name (via scBlastTab.query)
      knownGeneV39.foldUtr5.name (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via scBlastTab.query)
      knownGeneV39.kgAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgColor.kgID (via scBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via scBlastTab.query)
      knownGeneV39.kgXref.kgID (via scBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via scBlastTab.query)
      knownGeneV39.knownBlastTab.query (via scBlastTab.query)
      knownGeneV39.knownBlastTab.target (via scBlastTab.query)
      knownGeneV39.knownCanonical.protein (via scBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via scBlastTab.query)
      knownGeneV39.knownCds.name (via scBlastTab.query)
      knownGeneV39.knownGene.name (via scBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via scBlastTab.query)
      knownGeneV39.knownGenePep.name (via scBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via scBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via scBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via scBlastTab.query)
      knownGeneV39.knownToHprd.name (via scBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via scBlastTab.query)
      knownGeneV39.knownToMrna.name (via scBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via scBlastTab.query)
      knownGeneV39.knownToMupit.name (via scBlastTab.query)
      knownGeneV39.knownToPfam.name (via scBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via scBlastTab.query)
      knownGeneV39.knownToSuper.gene (via scBlastTab.query)
      knownGeneV39.knownToTag.name (via scBlastTab.query)
      knownGeneV39.knownToU133.name (via scBlastTab.query)
      knownGeneV39.knownToU95.name (via scBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via scBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via scBlastTab.query)
      knownGeneV39.mmBlastTab.query (via scBlastTab.query)
      knownGeneV39.rnBlastTab.query (via scBlastTab.query)
      knownGeneV39.scBlastTab.query (via scBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via scBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc001aby.2YOR206W32.584452658464742737002e-62234
uc001abz.2YOR206W30.0662238313726771137002e-77285
uc009vjq.1YOR206W30.0662238313726771137002e-77285
uc001acf.1YJR127C32.58895133684526197040.00637.4
uc001ach.1YIR019C27.2320212951413366498400.00000000159.7
uc001acj.2YLL039C32.6915610221157752280.000000000000270.1
uc001acy.1YBR094W24.41295157122805374527190.0000000000763.9
uc001acz.1YBR094W25.71798792073524526190.00000946.2
uc001adi.2YBR109C26.7671441237308481110.00736.2
uc009vjv.1YBR109C2475491115190481150.0135

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.