Schema for dmBlastTab
  Database: mm7    Primary Table: dmBlastTab    Row Count: 21,854   Data last updated: 2006-01-31
Format description: Blast alignments of Drosophila genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB001539varchar(255) values Name of sequence in this assembly (query)
target CG12792-RAvarchar(255) values Name of sequence in other assembly (target)
identity 52.89float range Percent identity
aliLength 346int(10) unsigned range Length of alignment
mismatch 156int(10) unsigned range Number of mismatches
gapOpen 3int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 342int(10) unsigned range End in query (non-inclusive)
tStart 113int(10) unsigned range Start in target (0 based)
tEnd 456int(10) unsigned range End in target (non-inclusive)
eValue 6e-104double range Expectation value
bitScore 374double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via dmBlastTab.query)
      knownGeneV39.ceBlastTab.query (via dmBlastTab.query)
      knownGeneV39.dmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.drBlastTab.query (via dmBlastTab.query)
      knownGeneV39.foldUtr3.name (via dmBlastTab.query)
      knownGeneV39.foldUtr5.name (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via dmBlastTab.query)
      knownGeneV39.kgAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgColor.kgID (via dmBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via dmBlastTab.query)
      knownGeneV39.kgXref.kgID (via dmBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.query (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.target (via dmBlastTab.query)
      knownGeneV39.knownCanonical.protein (via dmBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via dmBlastTab.query)
      knownGeneV39.knownCds.name (via dmBlastTab.query)
      knownGeneV39.knownGene.name (via dmBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via dmBlastTab.query)
      knownGeneV39.knownGenePep.name (via dmBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via dmBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via dmBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via dmBlastTab.query)
      knownGeneV39.knownToHprd.name (via dmBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via dmBlastTab.query)
      knownGeneV39.knownToMrna.name (via dmBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via dmBlastTab.query)
      knownGeneV39.knownToMupit.name (via dmBlastTab.query)
      knownGeneV39.knownToPfam.name (via dmBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via dmBlastTab.query)
      knownGeneV39.knownToSuper.gene (via dmBlastTab.query)
      knownGeneV39.knownToTag.name (via dmBlastTab.query)
      knownGeneV39.knownToU133.name (via dmBlastTab.query)
      knownGeneV39.knownToU95.name (via dmBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via dmBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via dmBlastTab.query)
      knownGeneV39.mmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.rnBlastTab.query (via dmBlastTab.query)
      knownGeneV39.scBlastTab.query (via dmBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via dmBlastTab.query)
      mm7.affyGnfU74ADistance.query (via dmBlastTab.query)
      mm7.affyGnfU74ADistance.target (via dmBlastTab.query)
      mm7.affyGnfU74BDistance.query (via dmBlastTab.query)
      mm7.affyGnfU74BDistance.target (via dmBlastTab.query)
      mm7.affyGnfU74CDistance.query (via dmBlastTab.query)
      mm7.affyGnfU74CDistance.target (via dmBlastTab.query)
      mm7.drBlastTab.query (via dmBlastTab.query)
      mm7.dupSpMrna.mrnaID (via dmBlastTab.query)
      mm7.foldUtr3.name (via dmBlastTab.query)
      mm7.foldUtr5.name (via dmBlastTab.query)
      mm7.gnfAtlas2Distance.query (via dmBlastTab.query)
      mm7.gnfAtlas2Distance.target (via dmBlastTab.query)
      mm7.hgBlastTab.query (via dmBlastTab.query)
      mm7.keggPathway.kgID (via dmBlastTab.query)
      mm7.kgAlias.kgID (via dmBlastTab.query)
      mm7.kgProtAlias.kgID (via dmBlastTab.query)
      mm7.kgSpAlias.kgID (via dmBlastTab.query)
      mm7.kgXref.kgID (via dmBlastTab.query)
      mm7.knownBlastTab.query (via dmBlastTab.query)
      mm7.knownBlastTab.target (via dmBlastTab.query)
      mm7.knownCanonical.transcript (via dmBlastTab.query)
      mm7.knownGene.name (via dmBlastTab.query)
      mm7.knownGeneLink.name (via dmBlastTab.query)
      mm7.knownGeneMrna.name (via dmBlastTab.query)
      mm7.knownGenePep.name (via dmBlastTab.query)
      mm7.knownIsoforms.transcript (via dmBlastTab.query)
      mm7.knownToAllenBrain.name (via dmBlastTab.query)
      mm7.knownToEnsembl.name (via dmBlastTab.query)
      mm7.knownToGnfAtlas2.name (via dmBlastTab.query)
      mm7.knownToKeggEntrez.name (via dmBlastTab.query)
      mm7.knownToLocusLink.name (via dmBlastTab.query)
      mm7.knownToPfam.name (via dmBlastTab.query)
      mm7.knownToRefSeq.name (via dmBlastTab.query)
      mm7.knownToVisiGene.name (via dmBlastTab.query)
      mm7.rnBlastTab.query (via dmBlastTab.query)
      mm7.scBlastTab.query (via dmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB001539CG12792-RA52.89346156303421134566e-104374
AB001926CG6603-RC42.368054201017817388042e-176616
AB003147CG6450-RC24.712551631068297123014820.000000254.7
AB003503CG6382-RA62.255511627455931106180632
AB005654CG4353-RC63.2337116493441594908e-113403
AB005662CG8110-RA39.25135861433713011412250794
AB006034CG18377-RA28.635033221031507945872e-40163
AB006329CG11153-RA73.081042803965003834874e-35146
AB006330CG11153-RA60.781533911743063745272e-41166
AB007811CG3159-RA41.95534295437559295603e-99359

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.