Schema for drBlastTab
  Database: mm7    Primary Table: drBlastTab    Row Count: 24,987   Data last updated: 2005-11-15
Format description: Blast alignments of Zebrafish genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB001539varchar(255) values Name of sequence in this assembly (query)
target ENSDARP00000023040varchar(255) values Name of sequence in other assembly (target)
identity 63.08float range Percent identity
aliLength 344int(10) unsigned range Length of alignment
mismatch 119int(10) unsigned range Number of mismatches
gapOpen 4int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 342int(10) unsigned range End in query (non-inclusive)
tStart 116int(10) unsigned range Start in target (0 based)
tEnd 454int(10) unsigned range End in target (non-inclusive)
eValue 9.999999999999999e-123double range Expectation value
bitScore 436.8double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via drBlastTab.query)
      knownGeneV39.ceBlastTab.query (via drBlastTab.query)
      knownGeneV39.dmBlastTab.query (via drBlastTab.query)
      knownGeneV39.drBlastTab.query (via drBlastTab.query)
      knownGeneV39.foldUtr3.name (via drBlastTab.query)
      knownGeneV39.foldUtr5.name (via drBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via drBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via drBlastTab.query)
      knownGeneV39.kgAlias.kgID (via drBlastTab.query)
      knownGeneV39.kgColor.kgID (via drBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via drBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via drBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via drBlastTab.query)
      knownGeneV39.kgXref.kgID (via drBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via drBlastTab.query)
      knownGeneV39.knownBlastTab.query (via drBlastTab.query)
      knownGeneV39.knownBlastTab.target (via drBlastTab.query)
      knownGeneV39.knownCanonical.protein (via drBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via drBlastTab.query)
      knownGeneV39.knownCds.name (via drBlastTab.query)
      knownGeneV39.knownGene.name (via drBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via drBlastTab.query)
      knownGeneV39.knownGenePep.name (via drBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via drBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via drBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via drBlastTab.query)
      knownGeneV39.knownToHprd.name (via drBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via drBlastTab.query)
      knownGeneV39.knownToMrna.name (via drBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via drBlastTab.query)
      knownGeneV39.knownToMupit.name (via drBlastTab.query)
      knownGeneV39.knownToPfam.name (via drBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via drBlastTab.query)
      knownGeneV39.knownToSuper.gene (via drBlastTab.query)
      knownGeneV39.knownToTag.name (via drBlastTab.query)
      knownGeneV39.knownToU133.name (via drBlastTab.query)
      knownGeneV39.knownToU95.name (via drBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via drBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via drBlastTab.query)
      knownGeneV39.mmBlastTab.query (via drBlastTab.query)
      knownGeneV39.rnBlastTab.query (via drBlastTab.query)
      knownGeneV39.scBlastTab.query (via drBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via drBlastTab.query)
      mm7.affyGnfU74ADistance.query (via drBlastTab.query)
      mm7.affyGnfU74ADistance.target (via drBlastTab.query)
      mm7.affyGnfU74BDistance.query (via drBlastTab.query)
      mm7.affyGnfU74BDistance.target (via drBlastTab.query)
      mm7.affyGnfU74CDistance.query (via drBlastTab.query)
      mm7.affyGnfU74CDistance.target (via drBlastTab.query)
      mm7.dmBlastTab.query (via drBlastTab.query)
      mm7.dupSpMrna.mrnaID (via drBlastTab.query)
      mm7.foldUtr3.name (via drBlastTab.query)
      mm7.foldUtr5.name (via drBlastTab.query)
      mm7.gnfAtlas2Distance.query (via drBlastTab.query)
      mm7.gnfAtlas2Distance.target (via drBlastTab.query)
      mm7.hgBlastTab.query (via drBlastTab.query)
      mm7.keggPathway.kgID (via drBlastTab.query)
      mm7.kgAlias.kgID (via drBlastTab.query)
      mm7.kgProtAlias.kgID (via drBlastTab.query)
      mm7.kgSpAlias.kgID (via drBlastTab.query)
      mm7.kgXref.kgID (via drBlastTab.query)
      mm7.knownBlastTab.query (via drBlastTab.query)
      mm7.knownBlastTab.target (via drBlastTab.query)
      mm7.knownCanonical.transcript (via drBlastTab.query)
      mm7.knownGene.name (via drBlastTab.query)
      mm7.knownGeneLink.name (via drBlastTab.query)
      mm7.knownGeneMrna.name (via drBlastTab.query)
      mm7.knownGenePep.name (via drBlastTab.query)
      mm7.knownIsoforms.transcript (via drBlastTab.query)
      mm7.knownToAllenBrain.name (via drBlastTab.query)
      mm7.knownToEnsembl.name (via drBlastTab.query)
      mm7.knownToGnfAtlas2.name (via drBlastTab.query)
      mm7.knownToKeggEntrez.name (via drBlastTab.query)
      mm7.knownToLocusLink.name (via drBlastTab.query)
      mm7.knownToPfam.name (via drBlastTab.query)
      mm7.knownToRefSeq.name (via drBlastTab.query)
      mm7.knownToVisiGene.name (via drBlastTab.query)
      mm7.rnBlastTab.query (via drBlastTab.query)
      mm7.scBlastTab.query (via drBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB001539ENSDARP0000002304063.08344119403421164549.999999999999999e-123436.8
AB001926ENSDARP0000002021460.618153057108173183801003
AB003147ENSDARP0000001789640.136132921465663736261.9999999999999998e-110397.5
AB003503ENSDARP0000002726867.2662094815597245730753.4
AB005654ENSDARP0000004819082.273445920343724155.000000000000001e-165577.4
AB005662ENSDARP0000004319769.031327350161213050130001665.6
AB006034ENSDARP0000002410140.547927463350754781.3e-98357.5
AB006329ENSDARP0000002297761.62456150863513675043e-109392.9
AB006330ENSDARP0000002369871.09384955123872986753e-113405.6
AB007407ENSDARP0000005068331.25144903341751713090.000001350.45

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.