Schema for hgBlastTab
  Database: mm7    Primary Table: hgBlastTab    Row Count: 24,760   Data last updated: 2007-02-12
Format description: Blast alignments of Human genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB001539varchar(255) values Name of sequence in this assembly (query)
target NM_031485varchar(255) values Name of sequence in other assembly (target)
identity 91.52float range Percent identity
aliLength 342int(10) unsigned range Length of alignment
mismatch 29int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 342int(10) unsigned range End in query (non-inclusive)
tStart 104int(10) unsigned range Start in target (0 based)
tEnd 446int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 638.6double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via hgBlastTab.query)
      knownGeneV39.ceBlastTab.query (via hgBlastTab.query)
      knownGeneV39.dmBlastTab.query (via hgBlastTab.query)
      knownGeneV39.drBlastTab.query (via hgBlastTab.query)
      knownGeneV39.foldUtr3.name (via hgBlastTab.query)
      knownGeneV39.foldUtr5.name (via hgBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via hgBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via hgBlastTab.query)
      knownGeneV39.kgAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgColor.kgID (via hgBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via hgBlastTab.query)
      knownGeneV39.kgXref.kgID (via hgBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via hgBlastTab.query)
      knownGeneV39.knownBlastTab.query (via hgBlastTab.query)
      knownGeneV39.knownBlastTab.target (via hgBlastTab.query)
      knownGeneV39.knownCanonical.protein (via hgBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via hgBlastTab.query)
      knownGeneV39.knownCds.name (via hgBlastTab.query)
      knownGeneV39.knownGene.name (via hgBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via hgBlastTab.query)
      knownGeneV39.knownGenePep.name (via hgBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via hgBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via hgBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via hgBlastTab.query)
      knownGeneV39.knownToHprd.name (via hgBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via hgBlastTab.query)
      knownGeneV39.knownToMrna.name (via hgBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via hgBlastTab.query)
      knownGeneV39.knownToMupit.name (via hgBlastTab.query)
      knownGeneV39.knownToPfam.name (via hgBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via hgBlastTab.query)
      knownGeneV39.knownToSuper.gene (via hgBlastTab.query)
      knownGeneV39.knownToTag.name (via hgBlastTab.query)
      knownGeneV39.knownToU133.name (via hgBlastTab.query)
      knownGeneV39.knownToU95.name (via hgBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via hgBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via hgBlastTab.query)
      knownGeneV39.mmBlastTab.query (via hgBlastTab.query)
      knownGeneV39.rnBlastTab.query (via hgBlastTab.query)
      knownGeneV39.scBlastTab.query (via hgBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via hgBlastTab.query)
      mm7.affyGnfU74ADistance.query (via hgBlastTab.query)
      mm7.affyGnfU74ADistance.target (via hgBlastTab.query)
      mm7.affyGnfU74BDistance.query (via hgBlastTab.query)
      mm7.affyGnfU74BDistance.target (via hgBlastTab.query)
      mm7.affyGnfU74CDistance.query (via hgBlastTab.query)
      mm7.affyGnfU74CDistance.target (via hgBlastTab.query)
      mm7.dmBlastTab.query (via hgBlastTab.query)
      mm7.drBlastTab.query (via hgBlastTab.query)
      mm7.dupSpMrna.mrnaID (via hgBlastTab.query)
      mm7.foldUtr3.name (via hgBlastTab.query)
      mm7.foldUtr5.name (via hgBlastTab.query)
      mm7.gnfAtlas2Distance.query (via hgBlastTab.query)
      mm7.gnfAtlas2Distance.target (via hgBlastTab.query)
      mm7.keggPathway.kgID (via hgBlastTab.query)
      mm7.kgAlias.kgID (via hgBlastTab.query)
      mm7.kgProtAlias.kgID (via hgBlastTab.query)
      mm7.kgSpAlias.kgID (via hgBlastTab.query)
      mm7.kgXref.kgID (via hgBlastTab.query)
      mm7.knownBlastTab.query (via hgBlastTab.query)
      mm7.knownBlastTab.target (via hgBlastTab.query)
      mm7.knownCanonical.transcript (via hgBlastTab.query)
      mm7.knownGene.name (via hgBlastTab.query)
      mm7.knownGeneLink.name (via hgBlastTab.query)
      mm7.knownGeneMrna.name (via hgBlastTab.query)
      mm7.knownGenePep.name (via hgBlastTab.query)
      mm7.knownIsoforms.transcript (via hgBlastTab.query)
      mm7.knownToAllenBrain.name (via hgBlastTab.query)
      mm7.knownToEnsembl.name (via hgBlastTab.query)
      mm7.knownToGnfAtlas2.name (via hgBlastTab.query)
      mm7.knownToKeggEntrez.name (via hgBlastTab.query)
      mm7.knownToLocusLink.name (via hgBlastTab.query)
      mm7.knownToPfam.name (via hgBlastTab.query)
      mm7.knownToRefSeq.name (via hgBlastTab.query)
      mm7.knownToVisiGene.name (via hgBlastTab.query)
      mm7.rnBlastTab.query (via hgBlastTab.query)
      mm7.scBlastTab.query (via hgBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB001539NM_03148591.5234229003421044460638.6
AB001926NM_01427891.84809633108173183901486.5
AB003147NM_00119566.076722115066306640732.6
AB003503NM_01809490.6859050411597396280993.8
AB004048NM_00538665.22461110410460.00005242.74
AB005654NM_14518598.55346410346734180692.2
AB005662NM_03339290.821340824013050133402269.6
AB006034NM_00078581.5508931050705080759.6
AB006329NM_00568690.07604513059506040939.9
AB006330NM_15298996.32380140123923707502.9999999999999996e-154541.6

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.