Schema for rnBlastTab
  Database: ce6    Primary Table: rnBlastTab    Row Count: 3,614   Data last updated: 2012-02-17
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query C42D4.8varchar(255) values Name of sequence in this assembly (query)
target RGD:1305574varchar(255) values Name of sequence in other assembly (target)
identity 50.6float range Percent identity
aliLength 500int(10) unsigned range Length of alignment
mismatch 227int(10) unsigned range Number of mismatches
gapOpen 7int(10) unsigned range Number of gap openings
qStart 895int(10) unsigned range Start in query (0 based)
qEnd 1394int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 481int(10) unsigned range End in target (non-inclusive)
eValue 6e-120double range Expectation value
bitScore 428double range Bit score

Connected Tables and Joining Fields
        ce6.dmBlastTab.query (via rnBlastTab.query)
      ce6.drBlastTab.query (via rnBlastTab.query)
      ce6.hgBlastTab.query (via rnBlastTab.query)
      ce6.kimExpDistance.query (via rnBlastTab.query)
      ce6.kimExpDistance.target (via rnBlastTab.query)
      ce6.mmBlastTab.query (via rnBlastTab.query)
      ce6.orfToGene.name (via rnBlastTab.query)
      ce6.sangerBlastTab.query (via rnBlastTab.query)
      ce6.sangerBlastTab.target (via rnBlastTab.query)
      ce6.sangerCanonical.transcript (via rnBlastTab.query)
      ce6.sangerGene.name (via rnBlastTab.query)
      ce6.sangerGeneToWBGeneID.sangerGene (via rnBlastTab.query)
      ce6.sangerIsoforms.transcript (via rnBlastTab.query)
      ce6.sangerLinks.orfName (via rnBlastTab.query)
      ce6.sangerPep.name (via rnBlastTab.query)
      ce6.sangerToRefSeq.name (via rnBlastTab.query)
      ce6.scBlastTab.query (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
C42D4.8RGD:130557450.65002277895139404816e-120428
T21H3.3RGD:225997.9914930014901495e-80291
F38A6.2RGD:130637428.66663429152398881788112e-80296
F28C1.3aRGD:159587036.07560312113856925452e-85313
F23H12.2RGD:70846738.9713676123159161451.0000000000000001e-23104
C02H7.3bRGD:61992242.1966628013458126524e-137485
F38A1.8RGD:131150447.964330711062406341e-139492
T26C5.3dRGD:62065349.364662126775411015456e-113403
Y71H2B.10aRGD:7104862.7196034170954094901107
C42C1.2RGD:130952836.47521257753552375062e-79292

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.