Schema for sangerBlastTab
  Database: ce6    Primary Table: sangerBlastTab    Row Count: 938,783   Data last updated: 2010-08-12
Format description: Blast alignments of Mouse genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query 2L52.1varchar(255) Name of sequence in this assembly (query)
target 2L52.1varchar(255) Name of sequence in other assembly (target)
identity 100float Percent identity
aliLength 427int(10) unsigned Length of alignment
mismatch 0int(10) unsigned Number of mismatches
gapOpen 0int(10) unsigned Number of gap openings
qStart 0int(10) unsigned Start in query (0 based)
qEnd 427int(10) unsigned End in query (non-inclusive)
tStart 0int(10) unsigned Start in target (0 based)
tEnd 427int(10) unsigned End in target (non-inclusive)
eValue 0double Expectation value
bitScore 827double Bit score

Connected Tables and Joining Fields
        ce6.dmBlastTab.query (via sangerBlastTab.query)
      ce6.drBlastTab.query (via sangerBlastTab.query)
      ce6.hgBlastTab.query (via sangerBlastTab.query)
      ce6.kimExpDistance.query (via sangerBlastTab.query)
      ce6.kimExpDistance.target (via sangerBlastTab.query)
      ce6.mmBlastTab.query (via sangerBlastTab.query)
      ce6.orfToGene.name (via sangerBlastTab.query)
      ce6.rnBlastTab.query (via sangerBlastTab.query)
      ce6.sangerCanonical.transcript (via sangerBlastTab.query)
      ce6.sangerGene.name (via sangerBlastTab.query)
      ce6.sangerGeneToWBGeneID.sangerGene (via sangerBlastTab.query)
      ce6.sangerIsoforms.transcript (via sangerBlastTab.query)
      ce6.sangerLinks.orfName (via sangerBlastTab.query)
      ce6.sangerPep.name (via sangerBlastTab.query)
      ce6.sangerToRefSeq.name (via sangerBlastTab.query)
      ce6.scBlastTab.query (via sangerBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
2L52.12L52.110042700042704270827
2L52.1C26C6.1b26.838255212941562330.000442.7
2L52.1C26C6.1a26.83825521294152616030.000442.7
2L52.1Y47D3A.6a26.4915190751471933320.00738.5
2RSSE.12RSSE.110034300034303430651
2RSSE.1K08E3.627.891471013391844355790.000000851.2
2RSSE.1Y53C10A.419.731471151401872634070.0000147.4
2RSSE.1C01F4.2a22.111991188542215427360.00738.1
2RSSE.22RSSE.210020700020702072e-116414
3R5.13R5.110021500021502156.000000000000001e-125442

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.