Schema for ceBlastTab
  Database: hg17    Primary Table: ceBlastTab    Row Count: 25,574   Data last updated: 2005-06-04
Format description: Blast alignments of C. elegans genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB000409varchar(255) values Name of sequence in this assembly (query)
target R166.5bvarchar(255) values Name of sequence in other assembly (target)
identity 52.98float range Percent identity
aliLength 285int(10) unsigned range Length of alignment
mismatch 128int(10) unsigned range Number of mismatches
gapOpen 3int(10) unsigned range Number of gap openings
qStart 43int(10) unsigned range Start in query (0 based)
qEnd 322int(10) unsigned range End in query (non-inclusive)
tStart 197int(10) unsigned range Start in target (0 based)
tEnd 482int(10) unsigned range End in target (non-inclusive)
eValue 7.9e-86double range Expectation value
bitScore 313.9double range Bit score

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via ceBlastTab.query)
      hg17.ccdsKgMap.geneId (via ceBlastTab.query)
      hg17.dmBlastTab.query (via ceBlastTab.query)
      hg17.drBlastTab.query (via ceBlastTab.query)
      hg17.dupSpMrna.mrnaID (via ceBlastTab.query)
      hg17.foldUtr3.name (via ceBlastTab.query)
      hg17.foldUtr5.name (via ceBlastTab.query)
      hg17.gladHumESDistance.query (via ceBlastTab.query)
      hg17.gladHumESDistance.target (via ceBlastTab.query)
      hg17.gnfAtlas2Distance.query (via ceBlastTab.query)
      hg17.gnfAtlas2Distance.target (via ceBlastTab.query)
      hg17.gnfU95Distance.query (via ceBlastTab.query)
      hg17.gnfU95Distance.target (via ceBlastTab.query)
      hg17.humanHprdP2P.query (via ceBlastTab.query)
      hg17.humanHprdP2P.target (via ceBlastTab.query)
      hg17.humanVidalP2P.query (via ceBlastTab.query)
      hg17.humanVidalP2P.target (via ceBlastTab.query)
      hg17.humanWankerP2P.query (via ceBlastTab.query)
      hg17.humanWankerP2P.target (via ceBlastTab.query)
      hg17.keggPathway.kgID (via ceBlastTab.query)
      hg17.kgAlias.kgID (via ceBlastTab.query)
      hg17.kgProtAlias.kgID (via ceBlastTab.query)
      hg17.kgSpAlias.kgID (via ceBlastTab.query)
      hg17.kgTargetAli.qName (via ceBlastTab.query)
      hg17.kgXref.kgID (via ceBlastTab.query)
      hg17.knownBlastTab.query (via ceBlastTab.query)
      hg17.knownBlastTab.target (via ceBlastTab.query)
      hg17.knownCanonical.transcript (via ceBlastTab.query)
      hg17.knownExpDistance.query (via ceBlastTab.query)
      hg17.knownExpDistance.target (via ceBlastTab.query)
      hg17.knownGene.name (via ceBlastTab.query)
      hg17.knownGeneLink.name (via ceBlastTab.query)
      hg17.knownGeneMrna.name (via ceBlastTab.query)
      hg17.knownGenePep.name (via ceBlastTab.query)
      hg17.knownIsoforms.transcript (via ceBlastTab.query)
      hg17.knownToAllenBrain.name (via ceBlastTab.query)
      hg17.knownToEnsembl.name (via ceBlastTab.query)
      hg17.knownToGnf1h.name (via ceBlastTab.query)
      hg17.knownToGnfAtlas2.name (via ceBlastTab.query)
      hg17.knownToHInv.name (via ceBlastTab.query)
      hg17.knownToHprd.name (via ceBlastTab.query)
      hg17.knownToKeggEntrez.name (via ceBlastTab.query)
      hg17.knownToLocusLink.name (via ceBlastTab.query)
      hg17.knownToPfam.name (via ceBlastTab.query)
      hg17.knownToRefSeq.name (via ceBlastTab.query)
      hg17.knownToSuper.gene (via ceBlastTab.query)
      hg17.knownToU133.name (via ceBlastTab.query)
      hg17.knownToU133Plus2.name (via ceBlastTab.query)
      hg17.knownToU95.name (via ceBlastTab.query)
      hg17.knownToVisiGene.name (via ceBlastTab.query)
      hg17.mmBlastTab.query (via ceBlastTab.query)
      hg17.rankProp.query (via ceBlastTab.query)
      hg17.rankProp.target (via ceBlastTab.query)
      hg17.rnBlastTab.query (via ceBlastTab.query)
      hg17.scBlastTab.query (via ceBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via ceBlastTab.query)
      knownGeneV39.ceBlastTab.query (via ceBlastTab.query)
      knownGeneV39.dmBlastTab.query (via ceBlastTab.query)
      knownGeneV39.drBlastTab.query (via ceBlastTab.query)
      knownGeneV39.foldUtr3.name (via ceBlastTab.query)
      knownGeneV39.foldUtr5.name (via ceBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via ceBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via ceBlastTab.query)
      knownGeneV39.kgAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgColor.kgID (via ceBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via ceBlastTab.query)
      knownGeneV39.kgXref.kgID (via ceBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via ceBlastTab.query)
      knownGeneV39.knownBlastTab.query (via ceBlastTab.query)
      knownGeneV39.knownBlastTab.target (via ceBlastTab.query)
      knownGeneV39.knownCanonical.protein (via ceBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via ceBlastTab.query)
      knownGeneV39.knownCds.name (via ceBlastTab.query)
      knownGeneV39.knownGene.name (via ceBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via ceBlastTab.query)
      knownGeneV39.knownGenePep.name (via ceBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via ceBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via ceBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via ceBlastTab.query)
      knownGeneV39.knownToHprd.name (via ceBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via ceBlastTab.query)
      knownGeneV39.knownToMrna.name (via ceBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via ceBlastTab.query)
      knownGeneV39.knownToMupit.name (via ceBlastTab.query)
      knownGeneV39.knownToPfam.name (via ceBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via ceBlastTab.query)
      knownGeneV39.knownToSuper.gene (via ceBlastTab.query)
      knownGeneV39.knownToTag.name (via ceBlastTab.query)
      knownGeneV39.knownToU133.name (via ceBlastTab.query)
      knownGeneV39.knownToU95.name (via ceBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via ceBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via ceBlastTab.query)
      knownGeneV39.mmBlastTab.query (via ceBlastTab.query)
      knownGeneV39.rnBlastTab.query (via ceBlastTab.query)
      knownGeneV39.scBlastTab.query (via ceBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via ceBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000409R166.5b52.982851283433221974827.9e-86313.9
AB000463K06H7.4305033128762633130.00734.65
AB000781T14G10.2b24.6622313251408162589910920.00000003758.15
AB000815C25A1.1147.7317687350223191934.5e-40160.6
AB001025K11C4.540.64182195732235840972623440201208.7
AB001328K04E7.248.391557010155642095.5e-31131
AB001535F54D1.528.95713661305532017501.5e-54211.8
AB002292R02F2.230.0428317861844623906581.2e-26119
AB002294Y55F3AM.1422.6146022912223663884412.2999999999999997e-24112.1
AB002311T14G10.2b37.93100754514103109731512558e-180628.2

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.