Schema for knownGenePep
  Database: hg17    Primary Table: knownGenePep    Row Count: 37,428   Data last updated: 2005-06-03
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000409varchar(255) values Name of gene
seq MVSSQKLEKPIEMGSSEPLPIADGDRR...longblob   mRNA sequence

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via knownGenePep.name)
      hg17.ccdsKgMap.geneId (via knownGenePep.name)
      hg17.ceBlastTab.query (via knownGenePep.name)
      hg17.dmBlastTab.query (via knownGenePep.name)
      hg17.drBlastTab.query (via knownGenePep.name)
      hg17.dupSpMrna.mrnaID (via knownGenePep.name)
      hg17.foldUtr3.name (via knownGenePep.name)
      hg17.foldUtr5.name (via knownGenePep.name)
      hg17.gladHumESDistance.query (via knownGenePep.name)
      hg17.gladHumESDistance.target (via knownGenePep.name)
      hg17.gnfAtlas2Distance.query (via knownGenePep.name)
      hg17.gnfAtlas2Distance.target (via knownGenePep.name)
      hg17.gnfU95Distance.query (via knownGenePep.name)
      hg17.gnfU95Distance.target (via knownGenePep.name)
      hg17.humanHprdP2P.query (via knownGenePep.name)
      hg17.humanHprdP2P.target (via knownGenePep.name)
      hg17.humanVidalP2P.query (via knownGenePep.name)
      hg17.humanVidalP2P.target (via knownGenePep.name)
      hg17.humanWankerP2P.query (via knownGenePep.name)
      hg17.humanWankerP2P.target (via knownGenePep.name)
      hg17.keggPathway.kgID (via knownGenePep.name)
      hg17.kgAlias.kgID (via knownGenePep.name)
      hg17.kgProtAlias.kgID (via knownGenePep.name)
      hg17.kgSpAlias.kgID (via knownGenePep.name)
      hg17.kgTargetAli.qName (via knownGenePep.name)
      hg17.kgXref.kgID (via knownGenePep.name)
      hg17.knownBlastTab.query (via knownGenePep.name)
      hg17.knownBlastTab.target (via knownGenePep.name)
      hg17.knownCanonical.transcript (via knownGenePep.name)
      hg17.knownExpDistance.query (via knownGenePep.name)
      hg17.knownExpDistance.target (via knownGenePep.name)
      hg17.knownGene.name (via knownGenePep.name)
      hg17.knownGeneLink.name (via knownGenePep.name)
      hg17.knownGeneMrna.name (via knownGenePep.name)
      hg17.knownIsoforms.transcript (via knownGenePep.name)
      hg17.knownToAllenBrain.name (via knownGenePep.name)
      hg17.knownToEnsembl.name (via knownGenePep.name)
      hg17.knownToGnf1h.name (via knownGenePep.name)
      hg17.knownToGnfAtlas2.name (via knownGenePep.name)
      hg17.knownToHInv.name (via knownGenePep.name)
      hg17.knownToHprd.name (via knownGenePep.name)
      hg17.knownToKeggEntrez.name (via knownGenePep.name)
      hg17.knownToLocusLink.name (via knownGenePep.name)
      hg17.knownToPfam.name (via knownGenePep.name)
      hg17.knownToRefSeq.name (via knownGenePep.name)
      hg17.knownToSuper.gene (via knownGenePep.name)
      hg17.knownToU133.name (via knownGenePep.name)
      hg17.knownToU133Plus2.name (via knownGenePep.name)
      hg17.knownToU95.name (via knownGenePep.name)
      hg17.knownToVisiGene.name (via knownGenePep.name)
      hg17.mmBlastTab.query (via knownGenePep.name)
      hg17.rankProp.query (via knownGenePep.name)
      hg17.rankProp.target (via knownGenePep.name)
      hg17.rnBlastTab.query (via knownGenePep.name)
      hg17.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.bioCycPathway.kgID (via knownGenePep.name)
      knownGeneV39.ceBlastTab.query (via knownGenePep.name)
      knownGeneV39.dmBlastTab.query (via knownGenePep.name)
      knownGeneV39.drBlastTab.query (via knownGenePep.name)
      knownGeneV39.foldUtr3.name (via knownGenePep.name)
      knownGeneV39.foldUtr5.name (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGenePep.name)
      knownGeneV39.kgAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgColor.kgID (via knownGenePep.name)
      knownGeneV39.kgProtAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgSpAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgTargetAli.qName (via knownGenePep.name)
      knownGeneV39.kgXref.kgID (via knownGenePep.name)
      knownGeneV39.knownAttrs.kgID (via knownGenePep.name)
      knownGeneV39.knownBlastTab.query (via knownGenePep.name)
      knownGeneV39.knownBlastTab.target (via knownGenePep.name)
      knownGeneV39.knownCanonical.protein (via knownGenePep.name)
      knownGeneV39.knownCanonical.transcript (via knownGenePep.name)
      knownGeneV39.knownCds.name (via knownGenePep.name)
      knownGeneV39.knownGene.name (via knownGenePep.name)
      knownGeneV39.knownGeneMrna.name (via knownGenePep.name)
      knownGeneV39.knownGenePep.name (via knownGenePep.name)
      knownGeneV39.knownIsoforms.transcript (via knownGenePep.name)
      knownGeneV39.knownToEnsembl.name (via knownGenePep.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGenePep.name)
      knownGeneV39.knownToHprd.name (via knownGenePep.name)
      knownGeneV39.knownToLocusLink.name (via knownGenePep.name)
      knownGeneV39.knownToMrna.name (via knownGenePep.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGenePep.name)
      knownGeneV39.knownToMupit.name (via knownGenePep.name)
      knownGeneV39.knownToPfam.name (via knownGenePep.name)
      knownGeneV39.knownToRefSeq.name (via knownGenePep.name)
      knownGeneV39.knownToSuper.gene (via knownGenePep.name)
      knownGeneV39.knownToTag.name (via knownGenePep.name)
      knownGeneV39.knownToU133.name (via knownGenePep.name)
      knownGeneV39.knownToU95.name (via knownGenePep.name)
      knownGeneV39.knownToVisiGene.name (via knownGenePep.name)
      knownGeneV39.knownToWikipedia.name (via knownGenePep.name)
      knownGeneV39.mmBlastTab.query (via knownGenePep.name)
      knownGeneV39.rnBlastTab.query (via knownGenePep.name)
      knownGeneV39.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.ucscScop.ucscId (via knownGenePep.name)

Sample Rows
 
nameseq
AB000409MVSSQKLEKPIEMGSSEPLPIADGDRRRKKKRRGRATDSLPGKFEDMYKLTSELLGEGAYAKVQGAVSLQNGKEYAVKIIEKQAGHSRSRVFREVETLYQCQGNKNILELIEFFEDDTRFYLVFEKLQ ...
AB000460MKVRLLRQLSAAAKVKAPSGLQGPPQAHQFISLLLEEYGALCQAARSISTFLGTLENEHLKKFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIRLGTTTHDTCSEDTYSTLLQRYQRSEEELRRV ...
AB000461MKVRLLRQLSAAAKVKAPSGLQGPPQAHQFISLLLEEYGALCQAARSISTFLGTLENEHLKKFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIRLGTTTHDTCSEDTYSTLLQRYQRSEEELRRV ...
AB000463MAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRQPRPQPAQALSQTEAGP
AB000781MRSVAHAAIFQSLCITPDTLAFNTSGNVCFMEQLSDDPEGAFVPPEFDVTGNTFEAHIYSLGATLKAALEYVAEPTLEPRLSQDLEALLSRMQAEDPGDRPDLESIIALCEEKLQLTSSCRVCRSLSA ...
AB000815MADQRMDISSTISDFMSPGPTDLLSSSLGTSGVDCNRKRKGSSTDYQESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA ...
AB001025MAEGGEGGEDEIQFLRTEDEVVLQCIATIHKEQRKFCLAAEGLGNRLCFLEPTSEAKYIPPDLCVCNFVLEQSLSVRALQEMLANTGENGGEGAAQGGGHRTLLYGHAVLLRHSFSGMYLTCLTTSRS ...
AB001328MRAILILYFTNFISWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVTSVSSINDLTDHNHDGTPDSLPVHVVLSLIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQRN ...
AB001535MKQVGEAVRDFSLSSSYKEGELITIGVATWGTVHRREGLIHPTGSFPAEYILDEDGQGNLTCLDSNHSHFILVDDGTHGQYGVEIPLRTRLEKFISEQTKERGGVAIKIPIVCVVLEGGPGTLHTIDN ...
AB002292MENPEEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYEEQSDSECKNGIPRSFLRSNHKKQLSHDLTRLKEHYEKKMRDLMASTVGVVEIQQLRQKHELKMQKLVKAAKDGTK ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.