Schema for gnfAtlas2Distance
  Database: hg17    Primary Table: gnfAtlas2Distance    Row Count: 32,458,000   Data last updated: 2005-10-27
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query NM_002155varchar(255) Query gene. Indexed
target NM_002155varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      hg17.ccdsKgMap.geneId (via gnfAtlas2Distance.query)
      hg17.ceBlastTab.query (via gnfAtlas2Distance.query)
      hg17.dmBlastTab.query (via gnfAtlas2Distance.query)
      hg17.drBlastTab.query (via gnfAtlas2Distance.query)
      hg17.dupSpMrna.mrnaID (via gnfAtlas2Distance.query)
      hg17.foldUtr3.name (via gnfAtlas2Distance.query)
      hg17.foldUtr5.name (via gnfAtlas2Distance.query)
      hg17.gladHumESDistance.query (via gnfAtlas2Distance.query)
      hg17.gladHumESDistance.target (via gnfAtlas2Distance.query)
      hg17.gnfU95Distance.query (via gnfAtlas2Distance.query)
      hg17.gnfU95Distance.target (via gnfAtlas2Distance.query)
      hg17.humanHprdP2P.query (via gnfAtlas2Distance.query)
      hg17.humanHprdP2P.target (via gnfAtlas2Distance.query)
      hg17.humanVidalP2P.query (via gnfAtlas2Distance.query)
      hg17.humanVidalP2P.target (via gnfAtlas2Distance.query)
      hg17.humanWankerP2P.query (via gnfAtlas2Distance.query)
      hg17.humanWankerP2P.target (via gnfAtlas2Distance.query)
      hg17.keggPathway.kgID (via gnfAtlas2Distance.query)
      hg17.kgAlias.kgID (via gnfAtlas2Distance.query)
      hg17.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      hg17.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      hg17.kgTargetAli.qName (via gnfAtlas2Distance.query)
      hg17.kgXref.kgID (via gnfAtlas2Distance.query)
      hg17.knownBlastTab.query (via gnfAtlas2Distance.query)
      hg17.knownBlastTab.target (via gnfAtlas2Distance.query)
      hg17.knownCanonical.transcript (via gnfAtlas2Distance.query)
      hg17.knownExpDistance.query (via gnfAtlas2Distance.query)
      hg17.knownExpDistance.target (via gnfAtlas2Distance.query)
      hg17.knownGene.name (via gnfAtlas2Distance.query)
      hg17.knownGeneLink.name (via gnfAtlas2Distance.query)
      hg17.knownGeneMrna.name (via gnfAtlas2Distance.query)
      hg17.knownGenePep.name (via gnfAtlas2Distance.query)
      hg17.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      hg17.knownToAllenBrain.name (via gnfAtlas2Distance.query)
      hg17.knownToEnsembl.name (via gnfAtlas2Distance.query)
      hg17.knownToGnf1h.name (via gnfAtlas2Distance.query)
      hg17.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      hg17.knownToHInv.name (via gnfAtlas2Distance.query)
      hg17.knownToHprd.name (via gnfAtlas2Distance.query)
      hg17.knownToKeggEntrez.name (via gnfAtlas2Distance.query)
      hg17.knownToLocusLink.name (via gnfAtlas2Distance.query)
      hg17.knownToPfam.name (via gnfAtlas2Distance.query)
      hg17.knownToRefSeq.name (via gnfAtlas2Distance.query)
      hg17.knownToSuper.gene (via gnfAtlas2Distance.query)
      hg17.knownToU133.name (via gnfAtlas2Distance.query)
      hg17.knownToU133Plus2.name (via gnfAtlas2Distance.query)
      hg17.knownToU95.name (via gnfAtlas2Distance.query)
      hg17.knownToVisiGene.name (via gnfAtlas2Distance.query)
      hg17.mmBlastTab.query (via gnfAtlas2Distance.query)
      hg17.rankProp.query (via gnfAtlas2Distance.query)
      hg17.rankProp.target (via gnfAtlas2Distance.query)
      hg17.rnBlastTab.query (via gnfAtlas2Distance.query)
      hg17.scBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.ceBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.dmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.drBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr3.name (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr5.name (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gnfAtlas2Distance.query)
      knownGeneV39.kgAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgColor.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgTargetAli.qName (via gnfAtlas2Distance.query)
      knownGeneV39.kgXref.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownAttrs.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.target (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.protein (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownCds.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGeneMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGenePep.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownToEnsembl.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToHprd.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToLocusLink.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrnaSingle.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMupit.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToPfam.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToRefSeq.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToSuper.gene (via gnfAtlas2Distance.query)
      knownGeneV39.knownToTag.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU133.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU95.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToVisiGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToWikipedia.name (via gnfAtlas2Distance.query)
      knownGeneV39.mmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.rnBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.scBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.ucscScop.ucscId (via gnfAtlas2Distance.query)

Sample Rows
 
querytargetdistance
NM_002155NM_0021550
NM_002155NM_0183890.479975
NM_002155AK0277470.479975
NM_002155NM_0219430.490076
NM_002155AY3058620.492215
NM_002155NM_1735620.492215
NM_002155BC0235250.492215
NM_002155NM_0177480.493405
NM_002155BC0088330.493405
NM_002155NM_0069120.496633

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.