Schema for knownGeneMrna
  Database: hg17    Primary Table: knownGeneMrna    Row Count: 37,428   Data last updated: 2005-06-03
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000409varchar(255) values Name of gene
seq gcgatctgcaggtaggggtgcgcgcga...longblob   mRNA sequence

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via knownGeneMrna.name)
      hg17.ccdsKgMap.geneId (via knownGeneMrna.name)
      hg17.ceBlastTab.query (via knownGeneMrna.name)
      hg17.dmBlastTab.query (via knownGeneMrna.name)
      hg17.drBlastTab.query (via knownGeneMrna.name)
      hg17.dupSpMrna.mrnaID (via knownGeneMrna.name)
      hg17.foldUtr3.name (via knownGeneMrna.name)
      hg17.foldUtr5.name (via knownGeneMrna.name)
      hg17.gladHumESDistance.query (via knownGeneMrna.name)
      hg17.gladHumESDistance.target (via knownGeneMrna.name)
      hg17.gnfAtlas2Distance.query (via knownGeneMrna.name)
      hg17.gnfAtlas2Distance.target (via knownGeneMrna.name)
      hg17.gnfU95Distance.query (via knownGeneMrna.name)
      hg17.gnfU95Distance.target (via knownGeneMrna.name)
      hg17.humanHprdP2P.query (via knownGeneMrna.name)
      hg17.humanHprdP2P.target (via knownGeneMrna.name)
      hg17.humanVidalP2P.query (via knownGeneMrna.name)
      hg17.humanVidalP2P.target (via knownGeneMrna.name)
      hg17.humanWankerP2P.query (via knownGeneMrna.name)
      hg17.humanWankerP2P.target (via knownGeneMrna.name)
      hg17.keggPathway.kgID (via knownGeneMrna.name)
      hg17.kgAlias.kgID (via knownGeneMrna.name)
      hg17.kgProtAlias.kgID (via knownGeneMrna.name)
      hg17.kgSpAlias.kgID (via knownGeneMrna.name)
      hg17.kgTargetAli.qName (via knownGeneMrna.name)
      hg17.kgXref.kgID (via knownGeneMrna.name)
      hg17.knownBlastTab.query (via knownGeneMrna.name)
      hg17.knownBlastTab.target (via knownGeneMrna.name)
      hg17.knownCanonical.transcript (via knownGeneMrna.name)
      hg17.knownExpDistance.query (via knownGeneMrna.name)
      hg17.knownExpDistance.target (via knownGeneMrna.name)
      hg17.knownGene.name (via knownGeneMrna.name)
      hg17.knownGeneLink.name (via knownGeneMrna.name)
      hg17.knownGenePep.name (via knownGeneMrna.name)
      hg17.knownIsoforms.transcript (via knownGeneMrna.name)
      hg17.knownToAllenBrain.name (via knownGeneMrna.name)
      hg17.knownToEnsembl.name (via knownGeneMrna.name)
      hg17.knownToGnf1h.name (via knownGeneMrna.name)
      hg17.knownToGnfAtlas2.name (via knownGeneMrna.name)
      hg17.knownToHInv.name (via knownGeneMrna.name)
      hg17.knownToHprd.name (via knownGeneMrna.name)
      hg17.knownToKeggEntrez.name (via knownGeneMrna.name)
      hg17.knownToLocusLink.name (via knownGeneMrna.name)
      hg17.knownToPfam.name (via knownGeneMrna.name)
      hg17.knownToRefSeq.name (via knownGeneMrna.name)
      hg17.knownToSuper.gene (via knownGeneMrna.name)
      hg17.knownToU133.name (via knownGeneMrna.name)
      hg17.knownToU133Plus2.name (via knownGeneMrna.name)
      hg17.knownToU95.name (via knownGeneMrna.name)
      hg17.knownToVisiGene.name (via knownGeneMrna.name)
      hg17.mmBlastTab.query (via knownGeneMrna.name)
      hg17.rankProp.query (via knownGeneMrna.name)
      hg17.rankProp.target (via knownGeneMrna.name)
      hg17.rnBlastTab.query (via knownGeneMrna.name)
      hg17.scBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.bioCycPathway.kgID (via knownGeneMrna.name)
      knownGeneV39.ceBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.dmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.drBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.foldUtr3.name (via knownGeneMrna.name)
      knownGeneV39.foldUtr5.name (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGeneMrna.name)
      knownGeneV39.kgAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgColor.kgID (via knownGeneMrna.name)
      knownGeneV39.kgProtAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgSpAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgTargetAli.qName (via knownGeneMrna.name)
      knownGeneV39.kgXref.kgID (via knownGeneMrna.name)
      knownGeneV39.knownAttrs.kgID (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.target (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.protein (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.transcript (via knownGeneMrna.name)
      knownGeneV39.knownCds.name (via knownGeneMrna.name)
      knownGeneV39.knownGene.name (via knownGeneMrna.name)
      knownGeneV39.knownGeneMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownGenePep.name (via knownGeneMrna.name)
      knownGeneV39.knownIsoforms.transcript (via knownGeneMrna.name)
      knownGeneV39.knownToEnsembl.name (via knownGeneMrna.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGeneMrna.name)
      knownGeneV39.knownToHprd.name (via knownGeneMrna.name)
      knownGeneV39.knownToLocusLink.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGeneMrna.name)
      knownGeneV39.knownToMupit.name (via knownGeneMrna.name)
      knownGeneV39.knownToPfam.name (via knownGeneMrna.name)
      knownGeneV39.knownToRefSeq.name (via knownGeneMrna.name)
      knownGeneV39.knownToSuper.gene (via knownGeneMrna.name)
      knownGeneV39.knownToTag.name (via knownGeneMrna.name)
      knownGeneV39.knownToU133.name (via knownGeneMrna.name)
      knownGeneV39.knownToU95.name (via knownGeneMrna.name)
      knownGeneV39.knownToVisiGene.name (via knownGeneMrna.name)
      knownGeneV39.knownToWikipedia.name (via knownGeneMrna.name)
      knownGeneV39.mmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.rnBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.scBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.ucscScop.ucscId (via knownGeneMrna.name)

Sample Rows
 
nameseq
AB000409gcgatctgcaggtaggggtgcgcgcgaccgctccccggcgggagccagcgaaggtttccatgtcagaggccgatggagaactgaagattgccacctacgcacaaaggccattgagacacttcgtgtag ...
AB000460cacaatgacatgcagacctgcatattggagctggacggagaaactgggctaatgtgacagacagcaacaagagtaaggcagttgcttcgctattgagagaaagaaccatatgaagaaatttcggcaga ...
AB000461cacaatgacatgcagacctgcatattggagctggacggagaaactgggctaatgtgacagacagcaacaagagtaaggcagttgcttcgctattgagagaaagaaccatatgaagaaatttcggcaga ...
AB000463cagccgggtgacccaggccgaggccggcagaagacagcctgatgccttgaagacttcctcttgcacttttgttggagggtgctggtttgctaaaagcagagagtatttttctttttatttattttgtt ...
AB000781agaacgtgtctctggctgacatcctctccctgcgggaccgcggcctcagcgagcaggaagcctgggccgtgtgcctggagtgcagcctgtccatgcggagcgtggcccacgccgccatcttccagagc ...
AB000815ctggatctggggtgtaagaactgtgacttcagatcatccaatggcagaccagagaatggacatttcttcaaccatcagtgatttcatgtccccgggccccaccgacctgctttccagctctcttggta ...
AB001025gggcagcagcagtcagcgcacgccgagcggctgccgggggaagcagaggcgccggaggctggggcaccgccgacgcctcgggagccatggccgaagggggagaaggaggcgaggacgagatccagttt ...
AB001328cagtcaccggtaagttactgaatctgcgttggctgcctttcatgccactggtgctcctttgtggctatggaccagtggggggtgtatttcaatcctgtgcttgtttctttttgtcagagtttctttgg ...
AB001535tgtgcagaattgtacagttgcgaaaccatgtcgctggcagctggtgctggcggtggagacttccctgtgcggtgctcagtgcatctgcacccgtgggggagggagctctttctctggccctgcagtca ...
AB002292ggggtcgcgggggacgcgggggacgcgggggacgcgggggacggcggggaacggcggggaacagcgggggacggcggggaacagcgggggacggcggggaacagcaggggactgcgggtcgcgtcctg ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.