Schema for gnfU95Distance
  Database: hg17    Primary Table: gnfU95Distance    Row Count: 16,501,000   Data last updated: 2005-06-04
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query NM_000171varchar(255) Query gene. Indexed
target NM_000171varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via gnfU95Distance.query)
      hg17.ccdsKgMap.geneId (via gnfU95Distance.query)
      hg17.ceBlastTab.query (via gnfU95Distance.query)
      hg17.dmBlastTab.query (via gnfU95Distance.query)
      hg17.drBlastTab.query (via gnfU95Distance.query)
      hg17.dupSpMrna.mrnaID (via gnfU95Distance.query)
      hg17.foldUtr3.name (via gnfU95Distance.query)
      hg17.foldUtr5.name (via gnfU95Distance.query)
      hg17.gladHumESDistance.query (via gnfU95Distance.query)
      hg17.gladHumESDistance.target (via gnfU95Distance.query)
      hg17.gnfAtlas2Distance.query (via gnfU95Distance.query)
      hg17.gnfAtlas2Distance.target (via gnfU95Distance.query)
      hg17.humanHprdP2P.query (via gnfU95Distance.query)
      hg17.humanHprdP2P.target (via gnfU95Distance.query)
      hg17.humanVidalP2P.query (via gnfU95Distance.query)
      hg17.humanVidalP2P.target (via gnfU95Distance.query)
      hg17.humanWankerP2P.query (via gnfU95Distance.query)
      hg17.humanWankerP2P.target (via gnfU95Distance.query)
      hg17.keggPathway.kgID (via gnfU95Distance.query)
      hg17.kgAlias.kgID (via gnfU95Distance.query)
      hg17.kgProtAlias.kgID (via gnfU95Distance.query)
      hg17.kgSpAlias.kgID (via gnfU95Distance.query)
      hg17.kgTargetAli.qName (via gnfU95Distance.query)
      hg17.kgXref.kgID (via gnfU95Distance.query)
      hg17.knownBlastTab.query (via gnfU95Distance.query)
      hg17.knownBlastTab.target (via gnfU95Distance.query)
      hg17.knownCanonical.transcript (via gnfU95Distance.query)
      hg17.knownExpDistance.query (via gnfU95Distance.query)
      hg17.knownExpDistance.target (via gnfU95Distance.query)
      hg17.knownGene.name (via gnfU95Distance.query)
      hg17.knownGeneLink.name (via gnfU95Distance.query)
      hg17.knownGeneMrna.name (via gnfU95Distance.query)
      hg17.knownGenePep.name (via gnfU95Distance.query)
      hg17.knownIsoforms.transcript (via gnfU95Distance.query)
      hg17.knownToAllenBrain.name (via gnfU95Distance.query)
      hg17.knownToEnsembl.name (via gnfU95Distance.query)
      hg17.knownToGnf1h.name (via gnfU95Distance.query)
      hg17.knownToGnfAtlas2.name (via gnfU95Distance.query)
      hg17.knownToHInv.name (via gnfU95Distance.query)
      hg17.knownToHprd.name (via gnfU95Distance.query)
      hg17.knownToKeggEntrez.name (via gnfU95Distance.query)
      hg17.knownToLocusLink.name (via gnfU95Distance.query)
      hg17.knownToPfam.name (via gnfU95Distance.query)
      hg17.knownToRefSeq.name (via gnfU95Distance.query)
      hg17.knownToSuper.gene (via gnfU95Distance.query)
      hg17.knownToU133.name (via gnfU95Distance.query)
      hg17.knownToU133Plus2.name (via gnfU95Distance.query)
      hg17.knownToU95.name (via gnfU95Distance.query)
      hg17.knownToVisiGene.name (via gnfU95Distance.query)
      hg17.mmBlastTab.query (via gnfU95Distance.query)
      hg17.rankProp.query (via gnfU95Distance.query)
      hg17.rankProp.target (via gnfU95Distance.query)
      hg17.rnBlastTab.query (via gnfU95Distance.query)
      hg17.scBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.bioCycPathway.kgID (via gnfU95Distance.query)
      knownGeneV39.ceBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.dmBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.drBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.foldUtr3.name (via gnfU95Distance.query)
      knownGeneV39.foldUtr5.name (via gnfU95Distance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gnfU95Distance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gnfU95Distance.query)
      knownGeneV39.kgAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgColor.kgID (via gnfU95Distance.query)
      knownGeneV39.kgProtAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgSpAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgTargetAli.qName (via gnfU95Distance.query)
      knownGeneV39.kgXref.kgID (via gnfU95Distance.query)
      knownGeneV39.knownAttrs.kgID (via gnfU95Distance.query)
      knownGeneV39.knownBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.knownBlastTab.target (via gnfU95Distance.query)
      knownGeneV39.knownCanonical.protein (via gnfU95Distance.query)
      knownGeneV39.knownCanonical.transcript (via gnfU95Distance.query)
      knownGeneV39.knownCds.name (via gnfU95Distance.query)
      knownGeneV39.knownGene.name (via gnfU95Distance.query)
      knownGeneV39.knownGeneMrna.name (via gnfU95Distance.query)
      knownGeneV39.knownGenePep.name (via gnfU95Distance.query)
      knownGeneV39.knownIsoforms.transcript (via gnfU95Distance.query)
      knownGeneV39.knownToEnsembl.name (via gnfU95Distance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gnfU95Distance.query)
      knownGeneV39.knownToHprd.name (via gnfU95Distance.query)
      knownGeneV39.knownToLocusLink.name (via gnfU95Distance.query)
      knownGeneV39.knownToMrna.name (via gnfU95Distance.query)
      knownGeneV39.knownToMrnaSingle.name (via gnfU95Distance.query)
      knownGeneV39.knownToMupit.name (via gnfU95Distance.query)
      knownGeneV39.knownToPfam.name (via gnfU95Distance.query)
      knownGeneV39.knownToRefSeq.name (via gnfU95Distance.query)
      knownGeneV39.knownToSuper.gene (via gnfU95Distance.query)
      knownGeneV39.knownToTag.name (via gnfU95Distance.query)
      knownGeneV39.knownToU133.name (via gnfU95Distance.query)
      knownGeneV39.knownToU95.name (via gnfU95Distance.query)
      knownGeneV39.knownToVisiGene.name (via gnfU95Distance.query)
      knownGeneV39.knownToWikipedia.name (via gnfU95Distance.query)
      knownGeneV39.mmBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.rnBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.scBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.ucscScop.ucscId (via gnfU95Distance.query)

Sample Rows
 
querytargetdistance
NM_000171NM_0001710
NM_000171AK0741690.679468
NM_000171NM_0155490.679468
NM_000171NM_0003980.734851
NM_000171NM_0073260.734851
NM_000171AK1245280.734851
NM_000171NM_0147740.73866
NM_000171NM_0072780.75334
NM_000171BC0845590.758468
NM_000171NM_0068770.777638

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.