Schema for knownBlastTab
  Database: hg17    Primary Table: knownBlastTab    Row Count: 9,757,382   Data last updated: 2005-06-04
Format description: Blast alignments to other proteins from this species.
On download server: MariaDB table dump directory
fieldexampleSQL type description
query AB000409varchar(255) Name of sequence in this assembly (query)
target AB000409varchar(255) Name of sequence in other assembly (target)
identity 90.57float Percent identity
aliLength 424int(10) unsigned Length of alignment
mismatch 0int(10) unsigned Number of mismatches
gapOpen 0int(10) unsigned Number of gap openings
qStart 0int(10) unsigned Start in query (0 based)
qEnd 424int(10) unsigned End in query (non-inclusive)
tStart 0int(10) unsigned Start in target (0 based)
tEnd 424int(10) unsigned End in target (non-inclusive)
eValue 0double Expectation value
bitScore 767.7double Bit score

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via knownBlastTab.query)
      hg17.ccdsKgMap.geneId (via knownBlastTab.query)
      hg17.ceBlastTab.query (via knownBlastTab.query)
      hg17.dmBlastTab.query (via knownBlastTab.query)
      hg17.drBlastTab.query (via knownBlastTab.query)
      hg17.dupSpMrna.mrnaID (via knownBlastTab.query)
      hg17.foldUtr3.name (via knownBlastTab.query)
      hg17.foldUtr5.name (via knownBlastTab.query)
      hg17.gladHumESDistance.query (via knownBlastTab.query)
      hg17.gladHumESDistance.target (via knownBlastTab.query)
      hg17.gnfAtlas2Distance.query (via knownBlastTab.query)
      hg17.gnfAtlas2Distance.target (via knownBlastTab.query)
      hg17.gnfU95Distance.query (via knownBlastTab.query)
      hg17.gnfU95Distance.target (via knownBlastTab.query)
      hg17.humanHprdP2P.query (via knownBlastTab.query)
      hg17.humanHprdP2P.target (via knownBlastTab.query)
      hg17.humanVidalP2P.query (via knownBlastTab.query)
      hg17.humanVidalP2P.target (via knownBlastTab.query)
      hg17.humanWankerP2P.query (via knownBlastTab.query)
      hg17.humanWankerP2P.target (via knownBlastTab.query)
      hg17.keggPathway.kgID (via knownBlastTab.query)
      hg17.kgAlias.kgID (via knownBlastTab.query)
      hg17.kgProtAlias.kgID (via knownBlastTab.query)
      hg17.kgSpAlias.kgID (via knownBlastTab.query)
      hg17.kgTargetAli.qName (via knownBlastTab.query)
      hg17.kgXref.kgID (via knownBlastTab.query)
      hg17.knownCanonical.transcript (via knownBlastTab.query)
      hg17.knownExpDistance.query (via knownBlastTab.query)
      hg17.knownExpDistance.target (via knownBlastTab.query)
      hg17.knownGene.name (via knownBlastTab.query)
      hg17.knownGeneLink.name (via knownBlastTab.query)
      hg17.knownGeneMrna.name (via knownBlastTab.query)
      hg17.knownGenePep.name (via knownBlastTab.query)
      hg17.knownIsoforms.transcript (via knownBlastTab.query)
      hg17.knownToAllenBrain.name (via knownBlastTab.query)
      hg17.knownToEnsembl.name (via knownBlastTab.query)
      hg17.knownToGnf1h.name (via knownBlastTab.query)
      hg17.knownToGnfAtlas2.name (via knownBlastTab.query)
      hg17.knownToHInv.name (via knownBlastTab.query)
      hg17.knownToHprd.name (via knownBlastTab.query)
      hg17.knownToKeggEntrez.name (via knownBlastTab.query)
      hg17.knownToLocusLink.name (via knownBlastTab.query)
      hg17.knownToPfam.name (via knownBlastTab.query)
      hg17.knownToRefSeq.name (via knownBlastTab.query)
      hg17.knownToSuper.gene (via knownBlastTab.query)
      hg17.knownToU133.name (via knownBlastTab.query)
      hg17.knownToU133Plus2.name (via knownBlastTab.query)
      hg17.knownToU95.name (via knownBlastTab.query)
      hg17.knownToVisiGene.name (via knownBlastTab.query)
      hg17.mmBlastTab.query (via knownBlastTab.query)
      hg17.rankProp.query (via knownBlastTab.query)
      hg17.rankProp.target (via knownBlastTab.query)
      hg17.rnBlastTab.query (via knownBlastTab.query)
      hg17.scBlastTab.query (via knownBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via knownBlastTab.query)
      knownGeneV39.ceBlastTab.query (via knownBlastTab.query)
      knownGeneV39.dmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.drBlastTab.query (via knownBlastTab.query)
      knownGeneV39.foldUtr3.name (via knownBlastTab.query)
      knownGeneV39.foldUtr5.name (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via knownBlastTab.query)
      knownGeneV39.kgAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgColor.kgID (via knownBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via knownBlastTab.query)
      knownGeneV39.kgXref.kgID (via knownBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.query (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.target (via knownBlastTab.query)
      knownGeneV39.knownCanonical.protein (via knownBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via knownBlastTab.query)
      knownGeneV39.knownCds.name (via knownBlastTab.query)
      knownGeneV39.knownGene.name (via knownBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via knownBlastTab.query)
      knownGeneV39.knownGenePep.name (via knownBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via knownBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via knownBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via knownBlastTab.query)
      knownGeneV39.knownToHprd.name (via knownBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via knownBlastTab.query)
      knownGeneV39.knownToMrna.name (via knownBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via knownBlastTab.query)
      knownGeneV39.knownToMupit.name (via knownBlastTab.query)
      knownGeneV39.knownToPfam.name (via knownBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via knownBlastTab.query)
      knownGeneV39.knownToSuper.gene (via knownBlastTab.query)
      knownGeneV39.knownToTag.name (via knownBlastTab.query)
      knownGeneV39.knownToU133.name (via knownBlastTab.query)
      knownGeneV39.knownToU95.name (via knownBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via knownBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via knownBlastTab.query)
      knownGeneV39.mmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.rnBlastTab.query (via knownBlastTab.query)
      knownGeneV39.scBlastTab.query (via knownBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via knownBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000409AB00040990.5742400042404240767.7
AB000409NM_00368482.5846501042404650747.7
AB000409NM_19897394.7234150034103410655.2
AB000409NM_19905474.313628501237403622e-160562.8
AB000409AF23777574.313628501237403622e-160562.8
AB000409BX53819390.8229400130424353295e-155544.7
AB000409NM_01757274.263387901235003383e-150528.9
AB000409AK09642390.96177301118851823.4e-86315.8
AB000409AK09642369.6689003354241772664.7e-27119.4
AB000409BC07314084.512920022135001291.5999999999999999e-62237.3

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.