Schema for rnBlastTab
  Database: hg17    Primary Table: rnBlastTab    Row Count: 10,728   Data last updated: 2007-02-12
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB000815varchar(255) values Name of sequence in this assembly (query)
target AF015953varchar(255) values Name of sequence in other assembly (target)
identity 91.48float range Percent identity
aliLength 223int(10) unsigned range Length of alignment
mismatch 5int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 223int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 223int(10) unsigned range End in target (non-inclusive)
eValue 9e-114double range Expectation value
bitScore 404.1double range Bit score

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via rnBlastTab.query)
      hg17.ccdsKgMap.geneId (via rnBlastTab.query)
      hg17.ceBlastTab.query (via rnBlastTab.query)
      hg17.dmBlastTab.query (via rnBlastTab.query)
      hg17.drBlastTab.query (via rnBlastTab.query)
      hg17.dupSpMrna.mrnaID (via rnBlastTab.query)
      hg17.foldUtr3.name (via rnBlastTab.query)
      hg17.foldUtr5.name (via rnBlastTab.query)
      hg17.gladHumESDistance.query (via rnBlastTab.query)
      hg17.gladHumESDistance.target (via rnBlastTab.query)
      hg17.gnfAtlas2Distance.query (via rnBlastTab.query)
      hg17.gnfAtlas2Distance.target (via rnBlastTab.query)
      hg17.gnfU95Distance.query (via rnBlastTab.query)
      hg17.gnfU95Distance.target (via rnBlastTab.query)
      hg17.humanHprdP2P.query (via rnBlastTab.query)
      hg17.humanHprdP2P.target (via rnBlastTab.query)
      hg17.humanVidalP2P.query (via rnBlastTab.query)
      hg17.humanVidalP2P.target (via rnBlastTab.query)
      hg17.humanWankerP2P.query (via rnBlastTab.query)
      hg17.humanWankerP2P.target (via rnBlastTab.query)
      hg17.keggPathway.kgID (via rnBlastTab.query)
      hg17.kgAlias.kgID (via rnBlastTab.query)
      hg17.kgProtAlias.kgID (via rnBlastTab.query)
      hg17.kgSpAlias.kgID (via rnBlastTab.query)
      hg17.kgTargetAli.qName (via rnBlastTab.query)
      hg17.kgXref.kgID (via rnBlastTab.query)
      hg17.knownBlastTab.query (via rnBlastTab.query)
      hg17.knownBlastTab.target (via rnBlastTab.query)
      hg17.knownCanonical.transcript (via rnBlastTab.query)
      hg17.knownExpDistance.query (via rnBlastTab.query)
      hg17.knownExpDistance.target (via rnBlastTab.query)
      hg17.knownGene.name (via rnBlastTab.query)
      hg17.knownGeneLink.name (via rnBlastTab.query)
      hg17.knownGeneMrna.name (via rnBlastTab.query)
      hg17.knownGenePep.name (via rnBlastTab.query)
      hg17.knownIsoforms.transcript (via rnBlastTab.query)
      hg17.knownToAllenBrain.name (via rnBlastTab.query)
      hg17.knownToEnsembl.name (via rnBlastTab.query)
      hg17.knownToGnf1h.name (via rnBlastTab.query)
      hg17.knownToGnfAtlas2.name (via rnBlastTab.query)
      hg17.knownToHInv.name (via rnBlastTab.query)
      hg17.knownToHprd.name (via rnBlastTab.query)
      hg17.knownToKeggEntrez.name (via rnBlastTab.query)
      hg17.knownToLocusLink.name (via rnBlastTab.query)
      hg17.knownToPfam.name (via rnBlastTab.query)
      hg17.knownToRefSeq.name (via rnBlastTab.query)
      hg17.knownToSuper.gene (via rnBlastTab.query)
      hg17.knownToU133.name (via rnBlastTab.query)
      hg17.knownToU133Plus2.name (via rnBlastTab.query)
      hg17.knownToU95.name (via rnBlastTab.query)
      hg17.knownToVisiGene.name (via rnBlastTab.query)
      hg17.mmBlastTab.query (via rnBlastTab.query)
      hg17.rankProp.query (via rnBlastTab.query)
      hg17.rankProp.target (via rnBlastTab.query)
      hg17.scBlastTab.query (via rnBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via rnBlastTab.query)
      knownGeneV39.ceBlastTab.query (via rnBlastTab.query)
      knownGeneV39.dmBlastTab.query (via rnBlastTab.query)
      knownGeneV39.drBlastTab.query (via rnBlastTab.query)
      knownGeneV39.foldUtr3.name (via rnBlastTab.query)
      knownGeneV39.foldUtr5.name (via rnBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via rnBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via rnBlastTab.query)
      knownGeneV39.kgAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgColor.kgID (via rnBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via rnBlastTab.query)
      knownGeneV39.kgXref.kgID (via rnBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via rnBlastTab.query)
      knownGeneV39.knownBlastTab.query (via rnBlastTab.query)
      knownGeneV39.knownBlastTab.target (via rnBlastTab.query)
      knownGeneV39.knownCanonical.protein (via rnBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via rnBlastTab.query)
      knownGeneV39.knownCds.name (via rnBlastTab.query)
      knownGeneV39.knownGene.name (via rnBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via rnBlastTab.query)
      knownGeneV39.knownGenePep.name (via rnBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via rnBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via rnBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via rnBlastTab.query)
      knownGeneV39.knownToHprd.name (via rnBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via rnBlastTab.query)
      knownGeneV39.knownToMrna.name (via rnBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via rnBlastTab.query)
      knownGeneV39.knownToMupit.name (via rnBlastTab.query)
      knownGeneV39.knownToPfam.name (via rnBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via rnBlastTab.query)
      knownGeneV39.knownToSuper.gene (via rnBlastTab.query)
      knownGeneV39.knownToTag.name (via rnBlastTab.query)
      knownGeneV39.knownToU133.name (via rnBlastTab.query)
      knownGeneV39.knownToU95.name (via rnBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via rnBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via rnBlastTab.query)
      knownGeneV39.mmBlastTab.query (via rnBlastTab.query)
      knownGeneV39.rnBlastTab.query (via rnBlastTab.query)
      knownGeneV39.scBlastTab.query (via rnBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000815AF01595391.4822350022302239e-114404.1
AB001328D5066481.71531500153321857.3e-69255.4
AB002336AB01925687.1681827307796287901409
AB002341U8103786.821214842011800121402139.4
AB002360Z3565485.22859102308586592201458.7
AB002384AY32519470.531113109901035102114301432.9
AB003177AF06772886.1223301022302224e-107382.1
AB003333AF07735463.7380525440775080501031.6
AB005060D8999675.261719106172578680921.8
AB006589U5743983.03489652048904860829.3

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.