Schema for mmBlastTab
  Database: hg17    Primary Table: mmBlastTab    Row Count: 25,506   Data last updated: 2007-02-12
Format description: Blast alignments of Mouse genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB000409varchar(255) values Name of sequence in this assembly (query)
target NM_021461varchar(255) values Name of sequence in other assembly (target)
identity 85.95float range Percent identity
aliLength 420int(10) unsigned range Length of alignment
mismatch 25int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 420int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 420int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 730.3double range Bit score

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via mmBlastTab.query)
      hg17.ccdsKgMap.geneId (via mmBlastTab.query)
      hg17.ceBlastTab.query (via mmBlastTab.query)
      hg17.dmBlastTab.query (via mmBlastTab.query)
      hg17.drBlastTab.query (via mmBlastTab.query)
      hg17.dupSpMrna.mrnaID (via mmBlastTab.query)
      hg17.foldUtr3.name (via mmBlastTab.query)
      hg17.foldUtr5.name (via mmBlastTab.query)
      hg17.gladHumESDistance.query (via mmBlastTab.query)
      hg17.gladHumESDistance.target (via mmBlastTab.query)
      hg17.gnfAtlas2Distance.query (via mmBlastTab.query)
      hg17.gnfAtlas2Distance.target (via mmBlastTab.query)
      hg17.gnfU95Distance.query (via mmBlastTab.query)
      hg17.gnfU95Distance.target (via mmBlastTab.query)
      hg17.humanHprdP2P.query (via mmBlastTab.query)
      hg17.humanHprdP2P.target (via mmBlastTab.query)
      hg17.humanVidalP2P.query (via mmBlastTab.query)
      hg17.humanVidalP2P.target (via mmBlastTab.query)
      hg17.humanWankerP2P.query (via mmBlastTab.query)
      hg17.humanWankerP2P.target (via mmBlastTab.query)
      hg17.keggPathway.kgID (via mmBlastTab.query)
      hg17.kgAlias.kgID (via mmBlastTab.query)
      hg17.kgProtAlias.kgID (via mmBlastTab.query)
      hg17.kgSpAlias.kgID (via mmBlastTab.query)
      hg17.kgTargetAli.qName (via mmBlastTab.query)
      hg17.kgXref.kgID (via mmBlastTab.query)
      hg17.knownBlastTab.query (via mmBlastTab.query)
      hg17.knownBlastTab.target (via mmBlastTab.query)
      hg17.knownCanonical.transcript (via mmBlastTab.query)
      hg17.knownExpDistance.query (via mmBlastTab.query)
      hg17.knownExpDistance.target (via mmBlastTab.query)
      hg17.knownGene.name (via mmBlastTab.query)
      hg17.knownGeneLink.name (via mmBlastTab.query)
      hg17.knownGeneMrna.name (via mmBlastTab.query)
      hg17.knownGenePep.name (via mmBlastTab.query)
      hg17.knownIsoforms.transcript (via mmBlastTab.query)
      hg17.knownToAllenBrain.name (via mmBlastTab.query)
      hg17.knownToEnsembl.name (via mmBlastTab.query)
      hg17.knownToGnf1h.name (via mmBlastTab.query)
      hg17.knownToGnfAtlas2.name (via mmBlastTab.query)
      hg17.knownToHInv.name (via mmBlastTab.query)
      hg17.knownToHprd.name (via mmBlastTab.query)
      hg17.knownToKeggEntrez.name (via mmBlastTab.query)
      hg17.knownToLocusLink.name (via mmBlastTab.query)
      hg17.knownToPfam.name (via mmBlastTab.query)
      hg17.knownToRefSeq.name (via mmBlastTab.query)
      hg17.knownToSuper.gene (via mmBlastTab.query)
      hg17.knownToU133.name (via mmBlastTab.query)
      hg17.knownToU133Plus2.name (via mmBlastTab.query)
      hg17.knownToU95.name (via mmBlastTab.query)
      hg17.knownToVisiGene.name (via mmBlastTab.query)
      hg17.rankProp.query (via mmBlastTab.query)
      hg17.rankProp.target (via mmBlastTab.query)
      hg17.rnBlastTab.query (via mmBlastTab.query)
      hg17.scBlastTab.query (via mmBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via mmBlastTab.query)
      knownGeneV39.ceBlastTab.query (via mmBlastTab.query)
      knownGeneV39.dmBlastTab.query (via mmBlastTab.query)
      knownGeneV39.drBlastTab.query (via mmBlastTab.query)
      knownGeneV39.foldUtr3.name (via mmBlastTab.query)
      knownGeneV39.foldUtr5.name (via mmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via mmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via mmBlastTab.query)
      knownGeneV39.kgAlias.kgID (via mmBlastTab.query)
      knownGeneV39.kgColor.kgID (via mmBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via mmBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via mmBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via mmBlastTab.query)
      knownGeneV39.kgXref.kgID (via mmBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via mmBlastTab.query)
      knownGeneV39.knownBlastTab.query (via mmBlastTab.query)
      knownGeneV39.knownBlastTab.target (via mmBlastTab.query)
      knownGeneV39.knownCanonical.protein (via mmBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via mmBlastTab.query)
      knownGeneV39.knownCds.name (via mmBlastTab.query)
      knownGeneV39.knownGene.name (via mmBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via mmBlastTab.query)
      knownGeneV39.knownGenePep.name (via mmBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via mmBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via mmBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via mmBlastTab.query)
      knownGeneV39.knownToHprd.name (via mmBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via mmBlastTab.query)
      knownGeneV39.knownToMrna.name (via mmBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via mmBlastTab.query)
      knownGeneV39.knownToMupit.name (via mmBlastTab.query)
      knownGeneV39.knownToPfam.name (via mmBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via mmBlastTab.query)
      knownGeneV39.knownToSuper.gene (via mmBlastTab.query)
      knownGeneV39.knownToTag.name (via mmBlastTab.query)
      knownGeneV39.knownToU133.name (via mmBlastTab.query)
      knownGeneV39.knownToU95.name (via mmBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via mmBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via mmBlastTab.query)
      knownGeneV39.mmBlastTab.query (via mmBlastTab.query)
      knownGeneV39.rnBlastTab.query (via mmBlastTab.query)
      knownGeneV39.scBlastTab.query (via mmBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via mmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000409NM_02146185.95420250042004200730.3
AB000463NM_01189395.1883400830832.9999999999999996e-42166
AB001535AB16674777.561297186501289213150702027.7
AB002292NM_17275177.6511411963011390113901761.9
AB002294NM_17274963.13182052018018140177902276.5
AB002313BC03120280.57592113220610206120989.9
AB002315NM_17806595.388232300823082301609.3
AB002331NM_17785266.9412282659012230118201540
AB002336NM_00100381588.3480628207796286701418.3
AB002341AK12225287.61202824011800118602129.8

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.