Schema for gnfAtlas2Distance
  Database: hg16    Primary Table: gnfAtlas2Distance    Row Count: 35,817,000   Data last updated: 2004-04-16
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query BC011528varchar(255) Query gene. Indexed
target BC011528varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg16.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      hg16.dmBlastTab.query (via gnfAtlas2Distance.query)
      hg16.drBlastTab.query (via gnfAtlas2Distance.query)
      hg16.dupSpMrna.mrnaID (via gnfAtlas2Distance.query)
      hg16.foldUtr3.name (via gnfAtlas2Distance.query)
      hg16.foldUtr5.name (via gnfAtlas2Distance.query)
      hg16.gnfU95Distance.query (via gnfAtlas2Distance.query)
      hg16.gnfU95Distance.target (via gnfAtlas2Distance.query)
      hg16.hg17Kg.name (via gnfAtlas2Distance.query)
      hg16.keggPathway.kgID (via gnfAtlas2Distance.query)
      hg16.kgAlias.kgID (via gnfAtlas2Distance.query)
      hg16.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      hg16.kgXref.kgID (via gnfAtlas2Distance.query)
      hg16.knownBlastTab.query (via gnfAtlas2Distance.query)
      hg16.knownBlastTab.target (via gnfAtlas2Distance.query)
      hg16.knownCanonical.transcript (via gnfAtlas2Distance.query)
      hg16.knownGene.name (via gnfAtlas2Distance.query)
      hg16.knownGeneLink.name (via gnfAtlas2Distance.query)
      hg16.knownGeneMrna.name (via gnfAtlas2Distance.query)
      hg16.knownGenePep.name (via gnfAtlas2Distance.query)
      hg16.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      hg16.knownToEnsembl.name (via gnfAtlas2Distance.query)
      hg16.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      hg16.knownToHInv.name (via gnfAtlas2Distance.query)
      hg16.knownToLocusLink.name (via gnfAtlas2Distance.query)
      hg16.knownToPfam.name (via gnfAtlas2Distance.query)
      hg16.knownToRefSeq.name (via gnfAtlas2Distance.query)
      hg16.knownToSuper.gene (via gnfAtlas2Distance.query)
      hg16.knownToU133.name (via gnfAtlas2Distance.query)
      hg16.knownToU95.name (via gnfAtlas2Distance.query)
      hg16.scBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.ceBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.dmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.drBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr3.name (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr5.name (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gnfAtlas2Distance.query)
      knownGeneV39.kgAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgColor.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgTargetAli.qName (via gnfAtlas2Distance.query)
      knownGeneV39.kgXref.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownAttrs.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.target (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.protein (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownCds.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGeneMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGenePep.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownToEnsembl.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToHprd.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToLocusLink.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrnaSingle.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMupit.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToPfam.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToRefSeq.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToSuper.gene (via gnfAtlas2Distance.query)
      knownGeneV39.knownToTag.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU133.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU95.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToVisiGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToWikipedia.name (via gnfAtlas2Distance.query)
      knownGeneV39.mmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.rnBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.scBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.ucscScop.ucscId (via gnfAtlas2Distance.query)

Sample Rows
 
querytargetdistance
BC011528BC0115280
BC011528L384870
BC011528AK0227340.423316
BC011528AB0587400.423316
BC011528AF2895970.423316
BC011528AF2756790.423316
BC011528AK0242870.423316
BC011528AY1632340.423316
BC011528AK0908780.423316
BC011528BC0076450.423316

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.