Schema for gnfU95Distance
  Database: hg16    Primary Table: gnfU95Distance    Row Count: 17,711,000   Data last updated: 2004-03-30
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query L17330varchar(255) Query gene. Indexed
target L17330varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg16.bioCycPathway.kgID (via gnfU95Distance.query)
      hg16.dmBlastTab.query (via gnfU95Distance.query)
      hg16.drBlastTab.query (via gnfU95Distance.query)
      hg16.dupSpMrna.mrnaID (via gnfU95Distance.query)
      hg16.foldUtr3.name (via gnfU95Distance.query)
      hg16.foldUtr5.name (via gnfU95Distance.query)
      hg16.gnfAtlas2Distance.query (via gnfU95Distance.query)
      hg16.gnfAtlas2Distance.target (via gnfU95Distance.query)
      hg16.hg17Kg.name (via gnfU95Distance.query)
      hg16.keggPathway.kgID (via gnfU95Distance.query)
      hg16.kgAlias.kgID (via gnfU95Distance.query)
      hg16.kgProtAlias.kgID (via gnfU95Distance.query)
      hg16.kgXref.kgID (via gnfU95Distance.query)
      hg16.knownBlastTab.query (via gnfU95Distance.query)
      hg16.knownBlastTab.target (via gnfU95Distance.query)
      hg16.knownCanonical.transcript (via gnfU95Distance.query)
      hg16.knownGene.name (via gnfU95Distance.query)
      hg16.knownGeneLink.name (via gnfU95Distance.query)
      hg16.knownGeneMrna.name (via gnfU95Distance.query)
      hg16.knownGenePep.name (via gnfU95Distance.query)
      hg16.knownIsoforms.transcript (via gnfU95Distance.query)
      hg16.knownToEnsembl.name (via gnfU95Distance.query)
      hg16.knownToGnfAtlas2.name (via gnfU95Distance.query)
      hg16.knownToHInv.name (via gnfU95Distance.query)
      hg16.knownToLocusLink.name (via gnfU95Distance.query)
      hg16.knownToPfam.name (via gnfU95Distance.query)
      hg16.knownToRefSeq.name (via gnfU95Distance.query)
      hg16.knownToSuper.gene (via gnfU95Distance.query)
      hg16.knownToU133.name (via gnfU95Distance.query)
      hg16.knownToU95.name (via gnfU95Distance.query)
      hg16.scBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.bioCycPathway.kgID (via gnfU95Distance.query)
      knownGeneV39.ceBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.dmBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.drBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.foldUtr3.name (via gnfU95Distance.query)
      knownGeneV39.foldUtr5.name (via gnfU95Distance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gnfU95Distance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gnfU95Distance.query)
      knownGeneV39.kgAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgColor.kgID (via gnfU95Distance.query)
      knownGeneV39.kgProtAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgSpAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgTargetAli.qName (via gnfU95Distance.query)
      knownGeneV39.kgXref.kgID (via gnfU95Distance.query)
      knownGeneV39.knownAttrs.kgID (via gnfU95Distance.query)
      knownGeneV39.knownBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.knownBlastTab.target (via gnfU95Distance.query)
      knownGeneV39.knownCanonical.protein (via gnfU95Distance.query)
      knownGeneV39.knownCanonical.transcript (via gnfU95Distance.query)
      knownGeneV39.knownCds.name (via gnfU95Distance.query)
      knownGeneV39.knownGene.name (via gnfU95Distance.query)
      knownGeneV39.knownGeneMrna.name (via gnfU95Distance.query)
      knownGeneV39.knownGenePep.name (via gnfU95Distance.query)
      knownGeneV39.knownIsoforms.transcript (via gnfU95Distance.query)
      knownGeneV39.knownToEnsembl.name (via gnfU95Distance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gnfU95Distance.query)
      knownGeneV39.knownToHprd.name (via gnfU95Distance.query)
      knownGeneV39.knownToLocusLink.name (via gnfU95Distance.query)
      knownGeneV39.knownToMrna.name (via gnfU95Distance.query)
      knownGeneV39.knownToMrnaSingle.name (via gnfU95Distance.query)
      knownGeneV39.knownToMupit.name (via gnfU95Distance.query)
      knownGeneV39.knownToPfam.name (via gnfU95Distance.query)
      knownGeneV39.knownToRefSeq.name (via gnfU95Distance.query)
      knownGeneV39.knownToSuper.gene (via gnfU95Distance.query)
      knownGeneV39.knownToTag.name (via gnfU95Distance.query)
      knownGeneV39.knownToU133.name (via gnfU95Distance.query)
      knownGeneV39.knownToU95.name (via gnfU95Distance.query)
      knownGeneV39.knownToVisiGene.name (via gnfU95Distance.query)
      knownGeneV39.knownToWikipedia.name (via gnfU95Distance.query)
      knownGeneV39.mmBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.rnBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.scBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.ucscScop.ucscId (via gnfU95Distance.query)

Sample Rows
 
querytargetdistance
L17330L173300
L17330X991410.84483
L17330AB0232170.903681
L17330X624710.932191
L17330X624720.932191
L17330X624740.932191
L17330X624730.932191
L17330X624690.932191
L17330AY2558390.932191
L17330V005430.932191

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.