Schema for knownBlastTab
  Database: hg16    Primary Table: knownBlastTab    Row Count: 11,616,973   Data last updated: 2004-03-29
Format description: Blast alignments to other proteins from this species.
On download server: MariaDB table dump directory
fieldexampleSQL type description
query AB000099varchar(255) Name of sequence in this assembly (query)
target AB000099varchar(255) Name of sequence in other assembly (target)
identity 100float Percent identity
aliLength 118int(10) unsigned Length of alignment
mismatch 0int(10) unsigned Number of mismatches
gapOpen 0int(10) unsigned Number of gap openings
qStart 0int(10) unsigned Start in query (0 based)
qEnd 118int(10) unsigned End in query (non-inclusive)
tStart 0int(10) unsigned Start in target (0 based)
tEnd 118int(10) unsigned End in target (non-inclusive)
eValue 6.1e-56double Expectation value
bitScore 211.8double Bit score

Connected Tables and Joining Fields
        hg16.bioCycPathway.kgID (via knownBlastTab.query)
      hg16.dmBlastTab.query (via knownBlastTab.query)
      hg16.drBlastTab.query (via knownBlastTab.query)
      hg16.dupSpMrna.mrnaID (via knownBlastTab.query)
      hg16.foldUtr3.name (via knownBlastTab.query)
      hg16.foldUtr5.name (via knownBlastTab.query)
      hg16.gnfAtlas2Distance.query (via knownBlastTab.query)
      hg16.gnfAtlas2Distance.target (via knownBlastTab.query)
      hg16.gnfU95Distance.query (via knownBlastTab.query)
      hg16.gnfU95Distance.target (via knownBlastTab.query)
      hg16.hg17Kg.name (via knownBlastTab.query)
      hg16.keggPathway.kgID (via knownBlastTab.query)
      hg16.kgAlias.kgID (via knownBlastTab.query)
      hg16.kgProtAlias.kgID (via knownBlastTab.query)
      hg16.kgXref.kgID (via knownBlastTab.query)
      hg16.knownCanonical.transcript (via knownBlastTab.query)
      hg16.knownGene.name (via knownBlastTab.query)
      hg16.knownGeneLink.name (via knownBlastTab.query)
      hg16.knownGeneMrna.name (via knownBlastTab.query)
      hg16.knownGenePep.name (via knownBlastTab.query)
      hg16.knownIsoforms.transcript (via knownBlastTab.query)
      hg16.knownToEnsembl.name (via knownBlastTab.query)
      hg16.knownToGnfAtlas2.name (via knownBlastTab.query)
      hg16.knownToHInv.name (via knownBlastTab.query)
      hg16.knownToLocusLink.name (via knownBlastTab.query)
      hg16.knownToPfam.name (via knownBlastTab.query)
      hg16.knownToRefSeq.name (via knownBlastTab.query)
      hg16.knownToSuper.gene (via knownBlastTab.query)
      hg16.knownToU133.name (via knownBlastTab.query)
      hg16.knownToU95.name (via knownBlastTab.query)
      hg16.scBlastTab.query (via knownBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via knownBlastTab.query)
      knownGeneV39.ceBlastTab.query (via knownBlastTab.query)
      knownGeneV39.dmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.drBlastTab.query (via knownBlastTab.query)
      knownGeneV39.foldUtr3.name (via knownBlastTab.query)
      knownGeneV39.foldUtr5.name (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via knownBlastTab.query)
      knownGeneV39.kgAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgColor.kgID (via knownBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via knownBlastTab.query)
      knownGeneV39.kgXref.kgID (via knownBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.query (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.target (via knownBlastTab.query)
      knownGeneV39.knownCanonical.protein (via knownBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via knownBlastTab.query)
      knownGeneV39.knownCds.name (via knownBlastTab.query)
      knownGeneV39.knownGene.name (via knownBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via knownBlastTab.query)
      knownGeneV39.knownGenePep.name (via knownBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via knownBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via knownBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via knownBlastTab.query)
      knownGeneV39.knownToHprd.name (via knownBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via knownBlastTab.query)
      knownGeneV39.knownToMrna.name (via knownBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via knownBlastTab.query)
      knownGeneV39.knownToMupit.name (via knownBlastTab.query)
      knownGeneV39.knownToPfam.name (via knownBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via knownBlastTab.query)
      knownGeneV39.knownToSuper.gene (via knownBlastTab.query)
      knownGeneV39.knownToTag.name (via knownBlastTab.query)
      knownGeneV39.knownToU133.name (via knownBlastTab.query)
      knownGeneV39.knownToU95.name (via knownBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via knownBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via knownBlastTab.query)
      knownGeneV39.mmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.rnBlastTab.query (via knownBlastTab.query)
      knownGeneV39.scBlastTab.query (via knownBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via knownBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000099AB00009910011800011801186.1e-56211.8
AB000099BX53823933.87140248117701360.00835.42
AB000114AB00011410042100042104210773.1
AB000114AF20540344.55303158261354413442.9e-62236.5
AB000114BC03249843.09311162461360723801.1e-58224.6
AB000114BT00670741.91303168446344183184.5e-55212.6
AB000114BT00670723.531871027222383562280.00005646.21
AB000114BC00703841.91303168446344183184.5e-55212.6
AB000114BC00703823.531871027222383562280.00005646.21
AB000114X7554639.32295174250343643565.2e-51199.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.