Schema for gnfU95Distance
  Database: hg38    Primary Table: gnfU95Distance    Row Count: 95,005,000   Data last updated: 2024-08-19
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query ENST00000471351.2varchar(255) Query gene. Indexed
target ENST00000471351.2varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg38.bioCycPathway.kgID (via gnfU95Distance.query)
      hg38.ccdsKgMap.geneId (via gnfU95Distance.query)
      hg38.ceBlastTab.query (via gnfU95Distance.query)
      hg38.dmBlastTab.query (via gnfU95Distance.query)
      hg38.drBlastTab.query (via gnfU95Distance.query)
      hg38.foldUtr3.name (via gnfU95Distance.query)
      hg38.foldUtr5.name (via gnfU95Distance.query)
      hg38.gnfAtlas2Distance.query (via gnfU95Distance.query)
      hg38.gnfAtlas2Distance.target (via gnfU95Distance.query)
      hg38.humanHprdP2P.query (via gnfU95Distance.query)
      hg38.humanHprdP2P.target (via gnfU95Distance.query)
      hg38.humanVidalP2P.query (via gnfU95Distance.query)
      hg38.humanVidalP2P.target (via gnfU95Distance.query)
      hg38.humanWankerP2P.query (via gnfU95Distance.query)
      hg38.humanWankerP2P.target (via gnfU95Distance.query)
      hg38.keggPathway.kgID (via gnfU95Distance.query)
      hg38.kgAlias.kgID (via gnfU95Distance.query)
      hg38.kgColor.kgID (via gnfU95Distance.query)
      hg38.kgProtAlias.kgID (via gnfU95Distance.query)
      hg38.kgSpAlias.kgID (via gnfU95Distance.query)
      hg38.kgTargetAli.qName (via gnfU95Distance.query)
      hg38.kgXref.kgID (via gnfU95Distance.query)
      hg38.knownAttrs.kgID (via gnfU95Distance.query)
      hg38.knownBlastTab.query (via gnfU95Distance.query)
      hg38.knownBlastTab.target (via gnfU95Distance.query)
      hg38.knownCanonical.transcript (via gnfU95Distance.query)
      hg38.knownCds.name (via gnfU95Distance.query)
      hg38.knownGene.name (via gnfU95Distance.query)
      hg38.knownGeneMrna.name (via gnfU95Distance.query)
      hg38.knownGenePep.name (via gnfU95Distance.query)
      hg38.knownIsoforms.transcript (via gnfU95Distance.query)
      hg38.knownToEnsembl.name (via gnfU95Distance.query)
      hg38.knownToGnfAtlas2.name (via gnfU95Distance.query)
      hg38.knownToHprd.name (via gnfU95Distance.query)
      hg38.knownToKeggEntrez.name (via gnfU95Distance.query)
      hg38.knownToLocusLink.name (via gnfU95Distance.query)
      hg38.knownToLynx.name (via gnfU95Distance.query)
      hg38.knownToMrna.name (via gnfU95Distance.query)
      hg38.knownToMrnaSingle.name (via gnfU95Distance.query)
      hg38.knownToMupit.name (via gnfU95Distance.query)
      hg38.knownToNextProt.name (via gnfU95Distance.query)
      hg38.knownToPfam.name (via gnfU95Distance.query)
      hg38.knownToRefSeq.name (via gnfU95Distance.query)
      hg38.knownToSuper.gene (via gnfU95Distance.query)
      hg38.knownToTag.name (via gnfU95Distance.query)
      hg38.knownToU133.name (via gnfU95Distance.query)
      hg38.knownToU95.name (via gnfU95Distance.query)
      hg38.knownToVisiGene.name (via gnfU95Distance.query)
      hg38.knownToWikipedia.name (via gnfU95Distance.query)
      hg38.mmBlastTab.query (via gnfU95Distance.query)
      hg38.rnBlastTab.query (via gnfU95Distance.query)
      hg38.scBlastTab.query (via gnfU95Distance.query)
      hg38.ucscScop.ucscId (via gnfU95Distance.query)
      knownGeneV39.bioCycPathway.kgID (via gnfU95Distance.query)
      knownGeneV39.ceBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.dmBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.drBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.foldUtr3.name (via gnfU95Distance.query)
      knownGeneV39.foldUtr5.name (via gnfU95Distance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gnfU95Distance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gnfU95Distance.query)
      knownGeneV39.kgAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgColor.kgID (via gnfU95Distance.query)
      knownGeneV39.kgProtAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgSpAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgTargetAli.qName (via gnfU95Distance.query)
      knownGeneV39.kgXref.kgID (via gnfU95Distance.query)
      knownGeneV39.knownAttrs.kgID (via gnfU95Distance.query)
      knownGeneV39.knownBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.knownBlastTab.target (via gnfU95Distance.query)
      knownGeneV39.knownCanonical.protein (via gnfU95Distance.query)
      knownGeneV39.knownCanonical.transcript (via gnfU95Distance.query)
      knownGeneV39.knownCds.name (via gnfU95Distance.query)
      knownGeneV39.knownGene.name (via gnfU95Distance.query)
      knownGeneV39.knownGeneMrna.name (via gnfU95Distance.query)
      knownGeneV39.knownGenePep.name (via gnfU95Distance.query)
      knownGeneV39.knownIsoforms.transcript (via gnfU95Distance.query)
      knownGeneV39.knownToEnsembl.name (via gnfU95Distance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gnfU95Distance.query)
      knownGeneV39.knownToHprd.name (via gnfU95Distance.query)
      knownGeneV39.knownToLocusLink.name (via gnfU95Distance.query)
      knownGeneV39.knownToMrna.name (via gnfU95Distance.query)
      knownGeneV39.knownToMrnaSingle.name (via gnfU95Distance.query)
      knownGeneV39.knownToMupit.name (via gnfU95Distance.query)
      knownGeneV39.knownToPfam.name (via gnfU95Distance.query)
      knownGeneV39.knownToRefSeq.name (via gnfU95Distance.query)
      knownGeneV39.knownToSuper.gene (via gnfU95Distance.query)
      knownGeneV39.knownToTag.name (via gnfU95Distance.query)
      knownGeneV39.knownToU133.name (via gnfU95Distance.query)
      knownGeneV39.knownToU95.name (via gnfU95Distance.query)
      knownGeneV39.knownToVisiGene.name (via gnfU95Distance.query)
      knownGeneV39.knownToWikipedia.name (via gnfU95Distance.query)
      knownGeneV39.mmBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.rnBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.scBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.ucscScop.ucscId (via gnfU95Distance.query)

Sample Rows
 
querytargetdistance
ENST00000471351.2ENST00000471351.20
ENST00000471351.2ENST00000462581.60
ENST00000471351.2ENST00000455880.20
ENST00000471351.2ENST00000274576.90
ENST00000471351.2ENST00000484731.30.679468
ENST00000471351.2ENST00000490180.20.679468
ENST00000471351.2ENST00000471182.70.679468
ENST00000471351.2ENST00000634379.20.679468
ENST00000471351.2ENST00000394691.70.679468
ENST00000471351.2ENST00000247226.130.679468

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.