Schema for humanHprdP2P
  Database: hg38    Primary Table: humanHprdP2P    Row Count: 10,134,177   Data last updated: 2024-08-19
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query ENST00000406381.6varchar(255) Query gene. Indexed
target ENST00000406381.6varchar(255) Target gene. Not indexed
distance 1float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg38.bioCycPathway.kgID (via humanHprdP2P.query)
      hg38.ccdsKgMap.geneId (via humanHprdP2P.query)
      hg38.ceBlastTab.query (via humanHprdP2P.query)
      hg38.dmBlastTab.query (via humanHprdP2P.query)
      hg38.drBlastTab.query (via humanHprdP2P.query)
      hg38.foldUtr3.name (via humanHprdP2P.query)
      hg38.foldUtr5.name (via humanHprdP2P.query)
      hg38.gnfAtlas2Distance.query (via humanHprdP2P.query)
      hg38.gnfAtlas2Distance.target (via humanHprdP2P.query)
      hg38.gnfU95Distance.query (via humanHprdP2P.query)
      hg38.gnfU95Distance.target (via humanHprdP2P.query)
      hg38.humanVidalP2P.query (via humanHprdP2P.query)
      hg38.humanVidalP2P.target (via humanHprdP2P.query)
      hg38.humanWankerP2P.query (via humanHprdP2P.query)
      hg38.humanWankerP2P.target (via humanHprdP2P.query)
      hg38.keggPathway.kgID (via humanHprdP2P.query)
      hg38.kgAlias.kgID (via humanHprdP2P.query)
      hg38.kgColor.kgID (via humanHprdP2P.query)
      hg38.kgProtAlias.kgID (via humanHprdP2P.query)
      hg38.kgSpAlias.kgID (via humanHprdP2P.query)
      hg38.kgTargetAli.qName (via humanHprdP2P.query)
      hg38.kgXref.kgID (via humanHprdP2P.query)
      hg38.knownAttrs.kgID (via humanHprdP2P.query)
      hg38.knownBlastTab.query (via humanHprdP2P.query)
      hg38.knownBlastTab.target (via humanHprdP2P.query)
      hg38.knownCanonical.transcript (via humanHprdP2P.query)
      hg38.knownCds.name (via humanHprdP2P.query)
      hg38.knownGene.name (via humanHprdP2P.query)
      hg38.knownGeneMrna.name (via humanHprdP2P.query)
      hg38.knownGenePep.name (via humanHprdP2P.query)
      hg38.knownIsoforms.transcript (via humanHprdP2P.query)
      hg38.knownToEnsembl.name (via humanHprdP2P.query)
      hg38.knownToGnfAtlas2.name (via humanHprdP2P.query)
      hg38.knownToHprd.name (via humanHprdP2P.query)
      hg38.knownToKeggEntrez.name (via humanHprdP2P.query)
      hg38.knownToLocusLink.name (via humanHprdP2P.query)
      hg38.knownToLynx.name (via humanHprdP2P.query)
      hg38.knownToMrna.name (via humanHprdP2P.query)
      hg38.knownToMrnaSingle.name (via humanHprdP2P.query)
      hg38.knownToMupit.name (via humanHprdP2P.query)
      hg38.knownToNextProt.name (via humanHprdP2P.query)
      hg38.knownToPfam.name (via humanHprdP2P.query)
      hg38.knownToRefSeq.name (via humanHprdP2P.query)
      hg38.knownToSuper.gene (via humanHprdP2P.query)
      hg38.knownToTag.name (via humanHprdP2P.query)
      hg38.knownToU133.name (via humanHprdP2P.query)
      hg38.knownToU95.name (via humanHprdP2P.query)
      hg38.knownToVisiGene.name (via humanHprdP2P.query)
      hg38.knownToWikipedia.name (via humanHprdP2P.query)
      hg38.mmBlastTab.query (via humanHprdP2P.query)
      hg38.rnBlastTab.query (via humanHprdP2P.query)
      hg38.scBlastTab.query (via humanHprdP2P.query)
      hg38.ucscScop.ucscId (via humanHprdP2P.query)
      knownGeneV39.bioCycPathway.kgID (via humanHprdP2P.query)
      knownGeneV39.ceBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.dmBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.drBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.foldUtr3.name (via humanHprdP2P.query)
      knownGeneV39.foldUtr5.name (via humanHprdP2P.query)
      knownGeneV39.gnfAtlas2Distance.query (via humanHprdP2P.query)
      knownGeneV39.gnfAtlas2Distance.target (via humanHprdP2P.query)
      knownGeneV39.kgAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgColor.kgID (via humanHprdP2P.query)
      knownGeneV39.kgProtAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgSpAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgTargetAli.qName (via humanHprdP2P.query)
      knownGeneV39.kgXref.kgID (via humanHprdP2P.query)
      knownGeneV39.knownAttrs.kgID (via humanHprdP2P.query)
      knownGeneV39.knownBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.knownBlastTab.target (via humanHprdP2P.query)
      knownGeneV39.knownCanonical.protein (via humanHprdP2P.query)
      knownGeneV39.knownCanonical.transcript (via humanHprdP2P.query)
      knownGeneV39.knownCds.name (via humanHprdP2P.query)
      knownGeneV39.knownGene.name (via humanHprdP2P.query)
      knownGeneV39.knownGeneMrna.name (via humanHprdP2P.query)
      knownGeneV39.knownGenePep.name (via humanHprdP2P.query)
      knownGeneV39.knownIsoforms.transcript (via humanHprdP2P.query)
      knownGeneV39.knownToEnsembl.name (via humanHprdP2P.query)
      knownGeneV39.knownToGnfAtlas2.name (via humanHprdP2P.query)
      knownGeneV39.knownToHprd.name (via humanHprdP2P.query)
      knownGeneV39.knownToLocusLink.name (via humanHprdP2P.query)
      knownGeneV39.knownToMrna.name (via humanHprdP2P.query)
      knownGeneV39.knownToMrnaSingle.name (via humanHprdP2P.query)
      knownGeneV39.knownToMupit.name (via humanHprdP2P.query)
      knownGeneV39.knownToPfam.name (via humanHprdP2P.query)
      knownGeneV39.knownToRefSeq.name (via humanHprdP2P.query)
      knownGeneV39.knownToSuper.gene (via humanHprdP2P.query)
      knownGeneV39.knownToTag.name (via humanHprdP2P.query)
      knownGeneV39.knownToU133.name (via humanHprdP2P.query)
      knownGeneV39.knownToU95.name (via humanHprdP2P.query)
      knownGeneV39.knownToVisiGene.name (via humanHprdP2P.query)
      knownGeneV39.knownToWikipedia.name (via humanHprdP2P.query)
      knownGeneV39.mmBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.rnBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.scBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.ucscScop.ucscId (via humanHprdP2P.query)
      hg38.knownToHprd.name (via humanHprdP2P.target)
      knownGeneV39.humanHprdP2P.target (via humanHprdP2P.target)
      knownGeneV39.knownToHprd.name (via humanHprdP2P.target)

Sample Rows
 
querytargetdistance
ENST00000406381.6ENST00000406381.61
ENST00000406381.6ENST00000541774.51
ENST00000406381.6ENST00000584601.51
ENST00000406381.6ENST00000269571.101
ENST00000541774.5ENST00000406381.61
ENST00000541774.5ENST00000541774.51
ENST00000541774.5ENST00000584601.51
ENST00000541774.5ENST00000269571.101
ENST00000584601.5ENST00000406381.61
ENST00000584601.5ENST00000541774.51

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.