Schema for knownGeneMrna
  Database: hg38    Primary Table: knownGeneMrna    Row Count: 412,034   Data last updated: 2024-08-19
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name ENST00000832824.1varchar(255) values Name of gene
seq CGCAGAGACGGGTAGAACCTCAGTAAT...longblob   mRNA sequence

Connected Tables and Joining Fields
        hg38.bioCycPathway.kgID (via knownGeneMrna.name)
      hg38.ccdsKgMap.geneId (via knownGeneMrna.name)
      hg38.ceBlastTab.query (via knownGeneMrna.name)
      hg38.dmBlastTab.query (via knownGeneMrna.name)
      hg38.drBlastTab.query (via knownGeneMrna.name)
      hg38.foldUtr3.name (via knownGeneMrna.name)
      hg38.foldUtr5.name (via knownGeneMrna.name)
      hg38.gnfAtlas2Distance.query (via knownGeneMrna.name)
      hg38.gnfAtlas2Distance.target (via knownGeneMrna.name)
      hg38.gnfU95Distance.query (via knownGeneMrna.name)
      hg38.gnfU95Distance.target (via knownGeneMrna.name)
      hg38.humanHprdP2P.query (via knownGeneMrna.name)
      hg38.humanHprdP2P.target (via knownGeneMrna.name)
      hg38.humanVidalP2P.query (via knownGeneMrna.name)
      hg38.humanVidalP2P.target (via knownGeneMrna.name)
      hg38.humanWankerP2P.query (via knownGeneMrna.name)
      hg38.humanWankerP2P.target (via knownGeneMrna.name)
      hg38.keggPathway.kgID (via knownGeneMrna.name)
      hg38.kgAlias.kgID (via knownGeneMrna.name)
      hg38.kgColor.kgID (via knownGeneMrna.name)
      hg38.kgProtAlias.kgID (via knownGeneMrna.name)
      hg38.kgSpAlias.kgID (via knownGeneMrna.name)
      hg38.kgTargetAli.qName (via knownGeneMrna.name)
      hg38.kgXref.kgID (via knownGeneMrna.name)
      hg38.knownAttrs.kgID (via knownGeneMrna.name)
      hg38.knownBlastTab.query (via knownGeneMrna.name)
      hg38.knownBlastTab.target (via knownGeneMrna.name)
      hg38.knownCanonical.transcript (via knownGeneMrna.name)
      hg38.knownCds.name (via knownGeneMrna.name)
      hg38.knownGene.name (via knownGeneMrna.name)
      hg38.knownGenePep.name (via knownGeneMrna.name)
      hg38.knownIsoforms.transcript (via knownGeneMrna.name)
      hg38.knownToEnsembl.name (via knownGeneMrna.name)
      hg38.knownToGnfAtlas2.name (via knownGeneMrna.name)
      hg38.knownToHprd.name (via knownGeneMrna.name)
      hg38.knownToKeggEntrez.name (via knownGeneMrna.name)
      hg38.knownToLocusLink.name (via knownGeneMrna.name)
      hg38.knownToLynx.name (via knownGeneMrna.name)
      hg38.knownToMrna.name (via knownGeneMrna.name)
      hg38.knownToMrnaSingle.name (via knownGeneMrna.name)
      hg38.knownToMupit.name (via knownGeneMrna.name)
      hg38.knownToNextProt.name (via knownGeneMrna.name)
      hg38.knownToPfam.name (via knownGeneMrna.name)
      hg38.knownToRefSeq.name (via knownGeneMrna.name)
      hg38.knownToSuper.gene (via knownGeneMrna.name)
      hg38.knownToTag.name (via knownGeneMrna.name)
      hg38.knownToU133.name (via knownGeneMrna.name)
      hg38.knownToU95.name (via knownGeneMrna.name)
      hg38.knownToVisiGene.name (via knownGeneMrna.name)
      hg38.knownToWikipedia.name (via knownGeneMrna.name)
      hg38.mmBlastTab.query (via knownGeneMrna.name)
      hg38.rnBlastTab.query (via knownGeneMrna.name)
      hg38.scBlastTab.query (via knownGeneMrna.name)
      hg38.ucscScop.ucscId (via knownGeneMrna.name)
      knownGeneV39.bioCycPathway.kgID (via knownGeneMrna.name)
      knownGeneV39.ceBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.dmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.drBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.foldUtr3.name (via knownGeneMrna.name)
      knownGeneV39.foldUtr5.name (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGeneMrna.name)
      knownGeneV39.kgAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgColor.kgID (via knownGeneMrna.name)
      knownGeneV39.kgProtAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgSpAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgTargetAli.qName (via knownGeneMrna.name)
      knownGeneV39.kgXref.kgID (via knownGeneMrna.name)
      knownGeneV39.knownAttrs.kgID (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.target (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.protein (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.transcript (via knownGeneMrna.name)
      knownGeneV39.knownCds.name (via knownGeneMrna.name)
      knownGeneV39.knownGene.name (via knownGeneMrna.name)
      knownGeneV39.knownGeneMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownGenePep.name (via knownGeneMrna.name)
      knownGeneV39.knownIsoforms.transcript (via knownGeneMrna.name)
      knownGeneV39.knownToEnsembl.name (via knownGeneMrna.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGeneMrna.name)
      knownGeneV39.knownToHprd.name (via knownGeneMrna.name)
      knownGeneV39.knownToLocusLink.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGeneMrna.name)
      knownGeneV39.knownToMupit.name (via knownGeneMrna.name)
      knownGeneV39.knownToPfam.name (via knownGeneMrna.name)
      knownGeneV39.knownToRefSeq.name (via knownGeneMrna.name)
      knownGeneV39.knownToSuper.gene (via knownGeneMrna.name)
      knownGeneV39.knownToTag.name (via knownGeneMrna.name)
      knownGeneV39.knownToU133.name (via knownGeneMrna.name)
      knownGeneV39.knownToU95.name (via knownGeneMrna.name)
      knownGeneV39.knownToVisiGene.name (via knownGeneMrna.name)
      knownGeneV39.knownToWikipedia.name (via knownGeneMrna.name)
      knownGeneV39.mmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.rnBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.scBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.ucscScop.ucscId (via knownGeneMrna.name)

Sample Rows
 
nameseq
ENST00000832824.1CGCAGAGACGGGTAGAACCTCAGTAATCCGAAAAGCCGGGATCGACCGCCCCTTGCTTGCAGCCGGGCACTACAGGACCCGCTTGCTCACGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGG ...
ENST00000832825.1GAGACGGGTAGAACCTCAGTAATCCGAAAAGCCGGGATCGACCGCCCCTTGCTTGCAGCCGGGCACTACAGGACCCGCTTGCTCACGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCA ...
ENST00000832826.1CCTGCTGGCAGCTGGGGACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATAGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAGTAGACTCCTAAATATGGGATTCCTGGGTTTAAA ...
ENST00000832827.1CTGCTGGCAGCTGGGGACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATAGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAGTAGACTCCTAAATATGGGATTCCTGGGTTTAAAA ...
ENST00000832828.1GACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATAGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAGTAGACTCCTAAATATGGGATTCCTGGGTTTAAAAGTAAAAAATAAATAT ...
ENST00000832829.1GAGAATGACTGCGCAAATTTGCCGGATTTCCTTTGCTGTTCCTGCATGTAGTTTAAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTG ...
ENST00000832830.1AGTTTAAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCC ...
ENST00000832837.1TAAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTG ...
ENST00000832836.1AAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTGT ...
ENST00000832832.1AAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTGT ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.