Schema for affyGnfU74BDistance
  Database: mm9    Primary Table: affyGnfU74BDistance    Row Count: 12,478,000   Data last updated: 2011-03-03
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query uc012eje.1varchar(255) Query gene. Indexed
target uc011wjc.1varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via affyGnfU74BDistance.query)
      knownGeneV39.ceBlastTab.query (via affyGnfU74BDistance.query)
      knownGeneV39.dmBlastTab.query (via affyGnfU74BDistance.query)
      knownGeneV39.drBlastTab.query (via affyGnfU74BDistance.query)
      knownGeneV39.foldUtr3.name (via affyGnfU74BDistance.query)
      knownGeneV39.foldUtr5.name (via affyGnfU74BDistance.query)
      knownGeneV39.gnfAtlas2Distance.query (via affyGnfU74BDistance.query)
      knownGeneV39.gnfAtlas2Distance.target (via affyGnfU74BDistance.query)
      knownGeneV39.kgAlias.kgID (via affyGnfU74BDistance.query)
      knownGeneV39.kgColor.kgID (via affyGnfU74BDistance.query)
      knownGeneV39.kgProtAlias.kgID (via affyGnfU74BDistance.query)
      knownGeneV39.kgSpAlias.kgID (via affyGnfU74BDistance.query)
      knownGeneV39.kgTargetAli.qName (via affyGnfU74BDistance.query)
      knownGeneV39.kgXref.kgID (via affyGnfU74BDistance.query)
      knownGeneV39.knownAttrs.kgID (via affyGnfU74BDistance.query)
      knownGeneV39.knownBlastTab.query (via affyGnfU74BDistance.query)
      knownGeneV39.knownBlastTab.target (via affyGnfU74BDistance.query)
      knownGeneV39.knownCanonical.protein (via affyGnfU74BDistance.query)
      knownGeneV39.knownCanonical.transcript (via affyGnfU74BDistance.query)
      knownGeneV39.knownCds.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownGene.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownGeneMrna.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownGenePep.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownIsoforms.transcript (via affyGnfU74BDistance.query)
      knownGeneV39.knownToEnsembl.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToGnfAtlas2.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToHprd.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToLocusLink.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToMrna.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToMrnaSingle.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToMupit.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToPfam.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToRefSeq.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToSuper.gene (via affyGnfU74BDistance.query)
      knownGeneV39.knownToTag.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToU133.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToU95.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToVisiGene.name (via affyGnfU74BDistance.query)
      knownGeneV39.knownToWikipedia.name (via affyGnfU74BDistance.query)
      knownGeneV39.mmBlastTab.query (via affyGnfU74BDistance.query)
      knownGeneV39.rnBlastTab.query (via affyGnfU74BDistance.query)
      knownGeneV39.scBlastTab.query (via affyGnfU74BDistance.query)
      knownGeneV39.ucscScop.ucscId (via affyGnfU74BDistance.query)
      mm9.affyGnfU74ADistance.query (via affyGnfU74BDistance.query)
      mm9.affyGnfU74ADistance.target (via affyGnfU74BDistance.query)
      mm9.affyGnfU74CDistance.query (via affyGnfU74BDistance.query)
      mm9.affyGnfU74CDistance.target (via affyGnfU74BDistance.query)
      mm9.bioCycPathway.kgID (via affyGnfU74BDistance.query)
      mm9.ccdsKgMap.geneId (via affyGnfU74BDistance.query)
      mm9.ceBlastTab.query (via affyGnfU74BDistance.query)
      mm9.dmBlastTab.query (via affyGnfU74BDistance.query)
      mm9.drBlastTab.query (via affyGnfU74BDistance.query)
      mm9.foldUtr3.name (via affyGnfU74BDistance.query)
      mm9.foldUtr5.name (via affyGnfU74BDistance.query)
      mm9.gnfAtlas2Distance.query (via affyGnfU74BDistance.query)
      mm9.gnfAtlas2Distance.target (via affyGnfU74BDistance.query)
      mm9.hgBlastTab.query (via affyGnfU74BDistance.query)
      mm9.keggPathway.kgID (via affyGnfU74BDistance.query)
      mm9.kgAlias.kgID (via affyGnfU74BDistance.query)
      mm9.kgColor.kgID (via affyGnfU74BDistance.query)
      mm9.kgProtAlias.kgID (via affyGnfU74BDistance.query)
      mm9.kgProtMap2.qName (via affyGnfU74BDistance.query)
      mm9.kgSpAlias.kgID (via affyGnfU74BDistance.query)
      mm9.kgTargetAli.qName (via affyGnfU74BDistance.query)
      mm9.kgTxInfo.name (via affyGnfU74BDistance.query)
      mm9.kgXref.kgID (via affyGnfU74BDistance.query)
      mm9.knownBlastTab.query (via affyGnfU74BDistance.query)
      mm9.knownBlastTab.target (via affyGnfU74BDistance.query)
      mm9.knownCanonical.protein (via affyGnfU74BDistance.query)
      mm9.knownCanonical.transcript (via affyGnfU74BDistance.query)
      mm9.knownGene.name (via affyGnfU74BDistance.query)
      mm9.knownGeneMrna.name (via affyGnfU74BDistance.query)
      mm9.knownGenePep.name (via affyGnfU74BDistance.query)
      mm9.knownIsoforms.transcript (via affyGnfU74BDistance.query)
      mm9.knownToAllenBrain.name (via affyGnfU74BDistance.query)
      mm9.knownToEnsembl.name (via affyGnfU74BDistance.query)
      mm9.knownToGnfAtlas2.name (via affyGnfU74BDistance.query)
      mm9.knownToKeggEntrez.name (via affyGnfU74BDistance.query)
      mm9.knownToLocusLink.name (via affyGnfU74BDistance.query)
      mm9.knownToPfam.name (via affyGnfU74BDistance.query)
      mm9.knownToRefSeq.name (via affyGnfU74BDistance.query)
      mm9.knownToSuper.gene (via affyGnfU74BDistance.query)
      mm9.knownToVisiGene.name (via affyGnfU74BDistance.query)
      mm9.rnBlastTab.query (via affyGnfU74BDistance.query)
      mm9.scBlastTab.query (via affyGnfU74BDistance.query)
      mm9.ucscScop.ucscId (via affyGnfU74BDistance.query)

Sample Rows
 
querytargetdistance
uc012eje.1uc011wjc.10
uc012eje.1uc007bes.10
uc012eje.1uc011wlz.10
uc012eje.1uc011wmi.10
uc012eje.1uc007bhm.10
uc012eje.1uc007bjq.10
uc012eje.1uc007bjp.10
uc012eje.1uc011wmq.10
uc012eje.1uc007bjs.20
uc012eje.1uc011wms.10

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.